Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq127 95.1 6e-15 >seq127 Length=80722 Score = 95.1 bits (104), Expect = 6e-15 Identities = 286/438 (65%), Gaps = 4/438 (1%) Strand=Plus/Minus Query 25921 CTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCT 25980 |||||| || ||| || | ||| || ||||||| || || | |||| || | Sbjct 27612 CTCAACGCGCTTCATGAAGAGATCAGGGATCCACAGAGCCAGGAACAGGTCTCGTGCACG 27553 Query 25981 CATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCA 26040 || ||||| ||||||||||||||| || || | || || || | ||| |||||||| Sbjct 27552 GATCTCTTCCTTTCCGTGATTCTTTCGAAGGTCCAGAAACTCGAAGACATCAGAGTGCCA 27493 Query 26041 TGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCT 26100 || || | |||||||||||| ||| | || ||||| ||||| || ||||| Sbjct 27492 GGGCTCGAGATAGATAGCAAAGGCACCGGGGCGCTTGTTGCCACCCTGATCAACATATCT 27433 Query 26101 TGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCT 26160 ||||| | ||||| ||| || ||| || | | |||| | || ||||| || | Sbjct 27432 GGCAGTGTTGTTGAACACTCGCAGCATGGGGATGATTCCATTGGATGTGCCGTTGGTACC 27373 Query 26161 ATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCA 26220 ||| | || ||||| | | ||| |||| | | | |||||| || || ||| Sbjct 27372 GGCAATGTACGAGCCTGTAGCACGAATGCGGTGAACGTTGAGACCGATACCTCCTGCCAT 27313 Query 26221 TTTTGAAATAGCTGCACA-ATC-TGAAACTGTATCGAAAATTCCTTTTATGCTATCACCT 26278 ||||| || ||||| || ||| | |||||| | || || | ||||| ||| | Sbjct 27312 CTTTGAGATCATGGCACAGGTCTTGAGA--GTATCGTAGATACCGTCAATGCTGTCATCC 27255 Query 26279 TTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAAT 26338 ||||| | | | || || || || | || | || | || || | ||| |||| Sbjct 27254 TTCATATCGACAAGGAAGCATGATGAGAGCTGAGCCTGGGGGGTACCGGCATTGAATAGA 27195 Query 26339 GTCGGTGTAGCATGAGTA 26356 || || | |||||||||| Sbjct 27194 GTGGGAGAAGCATGAGTA 27177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253037572951025