Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq127 147 6e-30 seq9 113 1e-19 seq5 111 5e-19 seq13 91.5 4e-13 seq7 89.7 2e-12 >seq127 Length=80722 Score = 147 bits (162), Expect = 6e-30 Identities = 550/859 (64%), Gaps = 5/859 (1%) Strand=Plus/Minus Query 155592 GACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCAC 155651 || ||||| || || || ||| ||| | | ||| |||||| | ||||||| ||| Sbjct 27926 GAAGCCAGGTTGCAAACAGCAACCTCATCGGGAGCGCAGTATTCAATAATCTCAGTGCAA 27867 Query 155652 AGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCC 155711 || || || || ||| || || | ||||||||||| |||| ||| ||||||||| Sbjct 27866 AGATTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCC 27807 Query 155712 TTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGG 155771 ||||| || ||| | ||| | || ||||| | || || || || ||| ||| || Sbjct 27806 TTGTAAAGCATGAAGGGGTTACCAGTCTCGGTTTGGGCTTCGAGGATCGAGTACCACAGC 27747 Query 155772 TCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTT 155831 | ||||| || || | || ||| ||||| ||| || || | Sbjct 27746 TTCTGGGCACGGATCGTCTGACGACCACGACCCTCCTTTTCATACTTCTCGTATAGGGCC 27687 Query 155832 CGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGAC 155891 | ||||| ||||| || ||| ||| |||||||||| | ||||| | || | | Sbjct 27686 TCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTAGGGCACATGAGAGTC 27627 Query 155892 CAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAA 155951 || | | || || |||| ||| || | |||| ||| | ||| ||| Sbjct 27626 CAGTTCTCGTTCTTCTCAACGCGCTTCATGAAGAGATCAGGGATCCACAGAGCCAGGAAC 27567 Query 155952 AGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCA 156011 ||||| | ||| ||| || | ||||||||||| || || || | || || Sbjct 27566 AGGTCTCGTGCACGGATCTCTTCCTTTCCGTGATTCTTTCGAAGGTCCAGAAACTCGAAG 27507 Query 156012 ATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCC 156068 | ||||| || ||||| ||||| |||||||| ||| | |||| |||||| Sbjct 27506 ACATCAGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCGGGGCGCTTGTTGCCACCC 27447 Query 156069 TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAA 156128 ||||| ||||| | ||||| || ||||| || | ||||| || || || |||||||| Sbjct 27446 TGATCAACATATCTGGCAGTGTTGTTGAACACTCGCAGCATGGGGATGATTCCATTGGAT 27387 Query 156129 GTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCA 156188 ||||| ||||| ||| ||| | ||| || | | |||| |||| | || || Sbjct 27386 GTGCCGTTGGTACCGGCAATGTACGAGCCTGTAGCACGAATGCGGTGAACGTTGAGACCG 27327 Query 156189 ATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTC 156247 ||||| |||| |||| || || || || || ||| | ||||| | | ||||| || Sbjct 27326 ATACCTCCTG-CCATCTTTGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATACCGTC 27268 Query 156248 AATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCC 156307 ||| ||||| | ||| | || |||| || | |||| | || || || Sbjct 27267 AATGCTGTCATCCTTCATATCGACAAGGAAGCATGATGAGAGCTGAGCCTGGGGGGTACC 27208 Query 156308 AGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGT 156367 || |||||||| || || | |||||| |||| |||| || ||||| || | ||| || Sbjct 27207 GGCATTGAATAGAGTGGGAGAAGCATGAGTAAAGAACTTGTTGGACATGTAGTTGTAGGT 27148 Query 156368 CTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATG 156427 ||| | | |||| ||| || ||||| | ||| || | ||| ||| || Sbjct 27147 CTCGATGACACGTTCAATGTTATCACCCCAAATACCCACAGAAACACGCATGATCATGTG 27088 Query 156428 CTGAGGACGCTCTACAATC 156446 || || ||||| |||||| Sbjct 27087 TTGTGGGCGCTCAACAATC 27069 >seq9 Length=1081052 Score = 113 bits (124), Expect = 1e-19 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 |||| ||||| ||||| | || ||||| ||| ||||||||||||||| | | Sbjct 1020502 TTCCCTGTATCCGCAAGAAGGCCGAGTGGGCAATTCGCTGGATCCAGGACAAGAAATCCA 1020443 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 || ||| ||||| ||||| || || | || |||||||| || ||||||||||| | Sbjct 1020442 CATTCGCTCAGCGTCTTGTTGCCTTCGCCGCCGTCGAGGGCATCTTCTTCAGTGGTGCTT 1020383 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || |||||||| ||| | || ||||||||| | | ||||| || || || |||| Sbjct 1020382 TCGCTTCTATTTTCTGGTTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACG 1020323 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 | || || || | ||||||| |||||||| || || || Sbjct 1020322 AGCTGATCTCCCGTGACGAGGGTCTTCACACTGACTTCGC 1020283 >seq5 Length=1482039 Score = 111 bits (122), Expect = 5e-19 Identities = 175/249 (70%), Gaps = 4/249 (2%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||| | | ||||| | |||||| |||||||||||||| || || || || || Sbjct 1059302 TCTTCAAGAGCCTTGACGAGACGACGTTGAATATAACCAGTCTCAGCAGTCTTCACTGCA 1059243 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTC--TTCCGGTCGTA 302689 |||||||| ||||| | | |||| ||||||| |||||||| | || | |||| | Sbjct 1059242 GTATCAATAAGACCTTCTCTACCAGCCATAGCGTGGAAGAAGAATTCGGATGGGGTC--A 1059185 Query 302690 GCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGG 302749 | || | || | ||| | |||||||| ||||| || || || || | || ||||| Sbjct 1059184 GACCACGAAGGTATGAGTTTTCAACGAATCCACGAGCTTCAGGAGAGTAATCATCCTTGG 1059125 Query 302750 TAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCT 302809 | ||||| |||| || | || | | ||| | || |||||||| || || || ||| Sbjct 1059124 TGAAGTGCGGCAATGTGCGGTAGTTGAAACCGAAGGGAATACGCTTACCCTCCACCATCT 1059065 Query 302810 GCTGTCCCA 302818 ||||||||| Sbjct 1059064 GCTGTCCCA 1059056 >seq13 Length=954410 Score = 91.5 bits (100), Expect = 4e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | || || || || | | | |||||||| | ||| | || || Sbjct 19326 ATCAGCCCACAAATCTCGCAGACGTGAACACGGAATGCATCAGAAACTTCAAAGAGACGC 19385 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 ||||| ||| || ||||| || | |||||||||||||| |||||||| |||||| Sbjct 19386 TCCTTGAGGAAAGCAGCGGCACCATGCGCGATCATACAATCACGTTCCATTTCTCCGAAA 19445 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTG 251564 |||||||||||||| | || | ||| || ||||||| Sbjct 19446 CGAAGACCACCATCTCTTGCACGACCTTCCACAGGCTG 19483 >seq7 Length=1388246 Score = 89.7 bits (98), Expect = 2e-12 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| ||||| |||||||||||||| || | || |||| || | || | || Sbjct 656174 CCAATGGCATCGATTTCGTCAATGAAGATAATGCAAGGAGCGTTCTTCCTTCCCTCCGCG 656233 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | |||| |||||| |||| || | ||||||| |||||||||||||||||||| | Sbjct 656234 AAGAGGTCTCGTACACGAGATGGACCGACACCAACAAACATTTCTACAAATTCAGAACCA 656293 Query 289150 GATAC-TTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || |||| ||| | || || || ||||| ||| | || ||||| ||||| Sbjct 656294 CTGACGCTGAA-GAAGGGCACGCCTGACTCTCCTGCAGTAGCCTTGGCAAGAAGAGTCTT 656352 Query 289209 ACCTGTTCCAGGTGGTCC 289226 ||| |||||||| || || Sbjct 656353 ACCGGTTCCAGGAGGCCC 656370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471802759019219