Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1 143 3e-28 seq9 120 4e-21 seq2 91.5 2e-12 >seq1 Length=2667860 Score = 143 bits (158), Expect = 3e-28 Identities = 97/109 (89%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||||||||||||||| ||||||||||| |||| |||||| | || || ||| Sbjct 1281892 GCTGCAAACTACCTCGACATCAAGGCTCTGCTCGATGTTGGCTGCAAGACCGTCGCTAAC 1281833 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| |||||||||||||||||||| || ||||||| Sbjct 1281832 ATGATCAAGGGCAAGTCTCCCGAGGAGATCCGCAAGACTTTCAACATCA 1281784 Score = 89.7 bits (98), Expect = 6e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1726964 CCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCG 1727023 ||||||| |||||||||| || | || |||||||| |||||||| ||||| ||||| ||| Sbjct 362923 CCGTCGATGTCGGGGTCGTTGACGAGACCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCG 362982 Query 1727024 ACATAGGCGCGCATGAC 1727040 | |||||||||||||| Sbjct 362983 AGGTAGGCGCGCATGAC 362999 >seq9 Length=1081052 Score = 120 bits (132), Expect = 4e-21 Identities = 174/244 (71%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || |||||| |||||| |||||||| ||||| | || ||||| Sbjct 1019986 GCCTTCTGGTAGTCACCGACGCGCTTCTCGAAGAAGTTGGTTTTGCCTCCAAGGGAGATG 1020045 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| || |||||| ||| ||| ||||| | | Sbjct 1020046 TTCTCCATGAAGTCGAAGGGGTTGGTCGACTTGTACACCTTGTCGTTGCCGAGAGCGACC 1020105 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || |||||||| ||||||||||||||||| ||| ||| |||||||||||| | Sbjct 1020106 AGAAGACGGTCGGCAACAAACTCGATGTACTGCTTCATCAGGTTGGCGTTCATGCCCAGC 1020165 Query 868871 A--GCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 | |||| | || || | ||| ||| ||||| ||||| || |||||| || || Sbjct 1020166 ATGGCGCAA--GGAAGGGCCTCAGTCAAGAACTCCTTCTCAATGGTGACGGCGTCAGTGA 1020223 Query 868929 TGAT 868932 |||| Sbjct 1020224 TGAT 1020227 >seq2 Length=2392652 Score = 91.5 bits (100), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 19095 GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCG 19154 ||||| |||||||| |||||||||||| | ||||| | ||||||||||| ||| |||| Sbjct 2117722 GGCCTAGGCGAGCCATGCTTTGACAAGCTTGAGGCTACCCTCGCCCACGCTATGATGTCT 2117781 Query 19155 ATCCCGGCCACCAAGGGATTCGAGATTGGC 19184 || || || || ||||| || ||||||||| Sbjct 2117782 ATTCCTGCTACTAAGGGCTTTGAGATTGGC 2117811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107074615094479