Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1 125 1e-22 seq3 113 7e-19 seq7 109 9e-18 seq9 98.7 2e-14 >seq1 Length=2667860 Score = 125 bits (138), Expect = 1e-22 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || || |||||||||||||||||| | || |||||| | || ||||||||||| || ||| Sbjct 1281892 GCTGCAAACTACCTCGACATCAAGGCTCTGCTCGATGTTGGCTGCAAGACCGTCGCTAAC 1281833 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| |||||||| ||||||||||| || ||||||| Sbjct 1281832 ATGATCAAGGGCAAGTCTCCCGAGGAGATCCGCAAGACTTTCAACATCA 1281784 Score = 95.1 bits (104), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 2175309 CCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCG 2175368 ||||||| |||||||||| || | || |||||||| |||||||| ||||| ||||| ||| Sbjct 362923 CCGTCGATGTCGGGGTCGTTGACGAGACCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCG 362982 Query 2175369 ACATAGGCGCGCATGACCACCAGGAGAGCGTC 2175400 | |||||||||||||| | || ||| |||| Sbjct 362983 AGGTAGGCGCGCATGACAATCACGAGCTCGTC 363014 >seq3 Length=1700362 Score = 113 bits (124), Expect = 7e-19 Identities = 80/92 (87%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||||||||| || ||||||||| |||| ||||| ||| ||| Sbjct 789429 GTACTTGGTGACGGCCTTGGTACCCTCAGAAACGGCGTGCTTGGCGAGTTCACCGGGCAG 789370 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||||||||| || | |||||||| ||||||| Sbjct 789369 GATCAGGCGAACAGAAGTCTGGATTTCGCGGG 789338 >seq7 Length=1388246 Score = 109 bits (120), Expect = 9e-18 Identities = 228/338 (67%), Gaps = 4/338 (1%) Strand=Plus/Plus Query 2019105 GAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATC 2019164 || |||||||| || ||||| || |||||||| ||| | || ||||| || | ||| Sbjct 846768 GAAGCCGTGCTGGAGCTCAACGCCAGTGACGAGCGTGGCATAGATGTCGTCCGAA--ATC 846825 Query 2019165 --ATCAAGCATCACGCTTCGAAAAGAATCGACCTGCCGCCCGGCCGCCACAAGGTGATCA 2019222 |||||| | || ||| | || |||| | || | ||||| || ||| Sbjct 846826 GTATCAAGGGTTTTGCACAGAAGAAGGTCACATTGCCAGCTGGGAGACACAAATTGGTCA 846885 Query 2019223 TCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGG 2019282 |||| |||||||| ||| || | || || | || ||||| || | | ||| |||| Sbjct 846886 TCCTTGATGAGGCTGACAGCATGACCTCCGGAGCGCAGCAAGCATTGAGGCGGACGATGG 846945 Query 2019283 AAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCG 2019342 ||| ||| |||||||||| |||||||| | |||||||| ||| | | |||| Sbjct 846946 AAATTTACTCCAACACGACACGGTTTGCCTTTGCCTGCAATCAGTCCAACAAAATTATCG 847005 Query 2019343 AAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCAGATCG 2019402 || | |||||| | |||||||||||||| | || || ||||| ||||| ||| Sbjct 847006 AACCTCTCCAGTCAAGATGCGCCATCTTGCGGTACGCAAAGCTTACCGATGCCCAAGTCG 847065 Query 2019403 CCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGTC 2019440 |||||| |||| ||||| || ||||||||| Sbjct 847066 TTAAGCGTCTCATGCAGATCATCGAAGCGGAAAAGGTC 847103 >seq9 Length=1081052 Score = 98.7 bits (108), Expect = 2e-14 Identities = 174/252 (69%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || |||||| |||||| |||||||| ||||| | | Sbjct 1019978 TGACACCGGCCTTCTGGTAGTCACCGACGCGCTTCTCGAAGAAGTTGGTTTTGCCTCCAA 1020037 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||| ||||||| || | ||| ||| ||| |||| Sbjct 1020038 GGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTCGACTTGTACACCTTGTCGTTGCCGA 1020097 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | || || |||||||| || || || |||||||| ||| ||| |||||||| Sbjct 1020098 GAGCGACCAGAAGACGGTCGGCAACAAACTCGATGTACTGCTTCATCAGGTTGGCGTTCA 1020157 Query 794071 TGCCGATGA--GCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 |||| | | |||| | || || | ||| | | ||||| ||||| || |||||| Sbjct 1020158 TGCCCAGCATGGCGCAA--GGAAGGGCCTCAGTCAAGAACTCCTTCTCAATGGTGACGGC 1020215 Query 794129 CTCGATGATGAT 794140 || ||||||| Sbjct 1020216 GTCAGTGATGAT 1020227 Score = 86.0 bits (94), Expect = 1e-10 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 794587 TCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCG 794646 ||||||| ||| ||||| |||||||| ||||||||||||||||||||||| || || Sbjct 1020596 TCCTTGATGTATGTGTCAATGAGGAGGGAGTAGGTCTCTGAGTGGATGTTCTCCATCATA 1020655 Query 794647 ATCTGGAAGCCATAAAAGCA 794666 |||||||| || || ||||| Sbjct 1020656 ATCTGGAATCCGTAGAAGCA 1020675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916162683220493