Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 >seq6 Length=1479970 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| |||||||| || || |||||||| || || ||||| || || | Sbjct 795619 CCACCACGCAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 795678 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||||||| | |||| | || || || || ||| Sbjct 795679 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGA 795738 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| ||||| || ||| || | || || | || | ||||||||| ||| || Sbjct 795739 ATACCCTCCTTGTCCTG-AATCTTCGACTTAACGTTGTCGATGGTGTCAGAAGATTCGAC 795797 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAAC 29774 || || || || || ||||| || | ||| || || Sbjct 795798 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 795833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385215505145967