Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq5 91.5 1e-12 seq4 89.7 4e-12 >seq5 Length=1482039 Score = 91.5 bits (100), Expect = 1e-12 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 ||||| |||||||| | ||||||||| | |||||| ||||| |||| || | || ||| Sbjct 1059196 GAATTCTTCTTCCACGCTATGGCTGGTAGAGAAGGTCTTATTGATACTGCAGTGAAGACT 1059255 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGAT 435240 ||||| ||||||||||||||| | || |||||| ||||||||| Sbjct 1059256 GCTGAGACTGGTTATATTCAACGTCGTCTCGTCAAGGCTCTTGAAGAT 1059303 Score = 86.0 bits (94), Expect = 5e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 432287 AGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACG 432346 ||| || || || ||| | ||||| || |||||||| ||||||||||| | || ||||| Sbjct 1057755 AGGAAAGGAGGGCCGTCTGAGAGGTAACTTGATGGGTAAGCGTGTCGACTTTTCAGCACG 1057814 Query 432347 TACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTAT 432406 ||| || || ||| |||| | || | | || | |||||||||||||||| || || Sbjct 1057815 TACTGTCATCACTGGTGATGCCAACCTGTCACTGCACGAAGTTGGTGTTCCTCGCAGCAT 1057874 Query 432407 TGCGAAAAATCTTAC 432421 ||| || |||||| Sbjct 1057875 TGCTCGAACTCTTAC 1057889 >seq4 Length=1629322 Score = 89.7 bits (98), Expect = 4e-12 Identities = 252/385 (65%), Gaps = 3/385 (1%) Strand=Plus/Plus Query 281424 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 281483 |||||| ||||| | ||||| |||||||| | || || || || || || || || | Sbjct 1498450 CGGCAGAGACATTCATGATACCGTTGGCATCAAGGTCGAAGGTAACCTCGATCTGGGGAA 1498509 Query 281484 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 281543 | || | |||| || ||||| || | | || | |||| || || || | Sbjct 1498510 CACCGCGAGGAGCGGGAGGGATACCAGTGAGCTCGAACTTGCCCATCAGGTTGTTGTCCT 1498569 Query 281544 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 281603 | ||| || || ||||||||| | | |||||| || ||| || || || || Sbjct 1498570 TGGTGCGTTGACGCTCACCCTCGTAGACCTGGATAAGGACACCAGGCTGGTTGTCGGAGA 1498629 Query 281604 AAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 281663 | || | || || ||| || || ||||| || ||||| | ||| | |||| Sbjct 1498630 AGGTGGAGAAGACCTCGGACTTCTTGGTGGGAATGGTGGTGTTGCGGGGAATGAGCTTGG 1498689 Query 281664 TCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 281723 |||| ||||||||||| || || | ||| ||||| || || | |||||| | |||| | Sbjct 1498690 TCATCATACCACCAGCGGTCTCAATACCGAGAGAGAGGGGTGCGACATCGAGCAGGAGGA 1498749 Query 281724 TAT-TTTGAAG--TTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCAC 281780 | | ||| | || | ||| | |||| || ||||| || || | ||||||| Sbjct 1498750 TCTCGTTGGTGGACTTGGAAGTAGTGTCACCAGACAGGATAGCAGCCTGGACGGCAGCAC 1498809 Query 281781 CATATGCAACAGCTTCATCAGGATT 281805 |||| |||||||| ||||| || || Sbjct 1498810 CATAGGCAACAGCCTCATCGGGGTT 1498834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740591761625862