Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq87 141 9e-29 seq9 127 2e-24 seq6 107 2e-18 seq4 102 8e-17 >seq87 Length=157873 Score = 141 bits (156), Expect = 9e-29 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| | ||| |||||||||||||||||| Sbjct 70622 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 70563 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||||||||| |||||||| |||||||| |||||| ||| Sbjct 70562 GGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 70503 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | |||||| |||| ||||| || || || || || || Sbjct 70502 GACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCCGTGAGGGT 70443 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 70442 CTTGACGAAAATCTGCAT 70425 >seq9 Length=1081052 Score = 127 bits (140), Expect = 2e-24 Identities = 342/514 (67%), Gaps = 23/514 (4%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| || |||||||| ||||| || ||||| |||||||| | | || ||||| | Sbjct 1019991 CTGGTAGTCACCGACGCGCTTCTCGAAGAAGTTGGTTTTGCCTCCAAGGGAGATGTTCTC 1020050 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTT--AAAGTATTTCGGCTGGCCCAACTGTACGAGC 120468 ||| || ||||| |||||| ||| || | | | ||| | ||| | || || Sbjct 1020051 CATGAAGTCGAAGGGGTTGGTCGACTTGTACACCTTGTCG--TTGCCGAGAGCGACCAGA 1020108 Query 120469 AGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAAC 120528 || ||||| || |||||||| ||||||| ||| | |||||||||||||||| Sbjct 1020109 AGACGGTCGGCAACAAACTCGATGTACTGCTTCATCAGGTTGGCGTTCATGCCCAGCATG 1020168 Query 120529 GCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG 120588 || || | ||| || || ||||||||||||||| || || || ||| ||| Sbjct 1020169 GCGCAAGGAAGGGCCTCAGTCAAGAACTCCTTCTCAATGGTGACGGCGTCAGTGATGATG 1020228 Query 120589 GCGAGCATAGTGTGGCCGGGCATCTTG------TGTTC-GATGCGCGTTCGGTAGTACAG 120641 | || || || |||| ||||| |||| | || | |||| | Sbjct 1020229 -CTCTCAA----TGACCTCCTTGCTTGCGCGGTTGTTCAGATGGGAGT---GGAGTA--G 1020278 Query 120642 GCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAG 120701 ||| || ||||| ||||| || |||||||| || || |||||||||||| || || || Sbjct 1020279 GCAAGCGAAGTCAGTGTGAAGACCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAG 1020338 Query 120702 GCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGC-AAAGCTGCCCGAAAAGA 120760 || ||||| | || | |||| | |||| || | || ||||| || |||| Sbjct 1020339 ACCAGGCATCAGACCACGCTTCTTCAACCAGAAAATAGAAGCGAAAGC-ACCACTGAAGA 1020397 Query 120761 ACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGT 120820 | | |||||| ||| ||| ||||| || | |||| || || || | ||||| | Sbjct 1020398 AGATGCCCTCGACGGCGGCGAAGGCAACAAGACGCTGAGCGAATGTGGATTTCTTGTCCT 1020457 Query 120821 CGATCCACTTCATGGCCCACTCGGCCTTTTTGCG 120854 |||||| || |||||||||||||| ||||| Sbjct 1020458 GGATCCAGCGAATTGCCCACTCGGCCTTCTTGCG 1020491 >seq6 Length=1479970 Score = 107 bits (118), Expect = 2e-18 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||||||||| ||||| || ||||| || | || ||| ||| || |||||||| Sbjct 795420 GGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGGGT--ACGGCCGTCTTCAAGCTGCTTT 795477 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | ||||| ||||||||||| |||||||| || ||||| || |||||| | Sbjct 795478 CCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGGATCTTCGAC 795537 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | |||| |||||| | | ||| || || | |||| || || ||||| || Sbjct 795538 TTCACATTGTCAATCGTGTCCGATGACTCGACTTCCAGTGTGATAGTCTTTCCGGTGAGG 795597 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || |||||||||||||| Sbjct 795598 GTCTTGACGAAAATCTGCAT 795617 Score = 105 bits (116), Expect = 6e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| ||| | ||| | | | ||||| |||||||| | Sbjct 795934 GGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCCTCAAGCTGCTTAC 795992 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| || ||||| ||||| ||||| || || |||||||| ||||| || Sbjct 795993 CAGCGAAAATCAGGCGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGAATCTTCGACT 796052 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | || || | | ||| || || | |||| ||| |||||||| || | Sbjct 796053 TGACATTGTCGATGGTATCAGAAGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGG 796112 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||||||||||||| Sbjct 796113 TCTTGACGAAAATCTGCATG 796132 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||||| || ||||| || ||||| ||| | ||| | | | ||||| || Sbjct 795640 AAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCCTCAAG 795698 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | || || ||||| ||||||||||| || || |||||||| || Sbjct 795699 CTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAAT 795758 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | || | ||||| | | || || |||| ||||| ||| ||||| Sbjct 795759 CTTCGACTTAACGTTGTCGATGGTGTCAGAAGATTCGACCTCGAGGGTGATGGTCTTGCC 795818 Query 133634 GGTCAGAGTTTTTACGA 133650 ||| || || || |||| Sbjct 795819 GGTGAGGGTCTTGACGA 795835 >seq4 Length=1629322 Score = 102 bits (112), Expect = 8e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| ||| | || || ||||| ||||| || || || || |||||| Sbjct 925037 TCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCAGGGGGAATTCCCTCCTTG 924978 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||||| | |||| ||||||| || ||| || || | ||||| | Sbjct 924977 TCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACCTCAAGGGTGATG 924918 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAA 133651 || ||||| ||||| || || ||||| Sbjct 924917 GTCTTGCCCGTCAGGGTCTTCACGAA 924892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483416044347880