Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq127 120 7e-22 >seq127 Length=80722 Score = 120 bits (132), Expect = 7e-22 Identities = 451/703 (64%), Gaps = 7/703 (1%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 || || |||||||| || || || ||| | ||| | || |||| ||| |||| || Sbjct 27016 TACTTCGGTTTCAAGACACTGGAGCGTTCCTATCTCCTCAAGCTCAACGGCAAGATTGTT 27075 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 || || || ||||||||| | | |||||| | | |||||| || || | ||| || Sbjct 27076 GAGCGCCCACAACACATGATCATGCGTGTTTCTGTGGGTATTTGGGGTGATAACATTGAA 27135 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGT--AAAAAGAAAGCTATTCATGCTACTCCTA 110481 ||| || || || | || | || || ||| || ||||||| |||| | Sbjct 27136 CGTGTCATCGAGACCTACAAC-TAC-ATGTCCAACAAGTTCTTTACTCATGCTTCTCCCA 27193 Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTA 110541 | ||||| || || || || | || | | || ||||| ||| | | || | Sbjct 27194 CTCTATTCAATGCCGGTACCCCCCAGGCTCAGCTCTCATCATGCTTCCTTGTCGATATGA 27253 Query 110542 ACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAA 110601 | ||||| ||||| ||||| || ||| |||| || ||| | || || || | Sbjct 27254 AGGATGACAGCATTGACGGTATCTACGATACTCTCAAGACCTGTGCCATGATCTCAAAGA 27313 Query 110602 ACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAA 110661 | ||||| || ||| | ||||||| ||||| | | ||| | | || || Sbjct 27314 TGGCAGGAGGTATCGGTCTCAACGTTCACCGCATTCGTGCTACAGGCTCGTACATTGCCG 27373 Query 110662 CAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAA 110721 | || || | || | |||| | | || ||| | |||| |||||| ||||||| | Sbjct 27374 GTACCAACGGCACATCCAATGGAATCATCCCCATGCTGCGAGTGTTCAACAACACTGCCA 27433 Query 110722 AATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAACCTT 110778 |||||| |||| ||||| || | | || | ||||||||||||||||| || | Sbjct 27434 GATATGTTGATCAGGGTGGCAACAAGCGCCCCGGTGCCTTTGCTATCTATCTCGAGCCCT 27493 Query 110779 GGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA 110838 |||| || ||| | || || || | || ||||| || ||||| ||| ||||| Sbjct 27494 GGCACTCTGATGTCTTCGAGTTTCTGGACCTTCGAAAGAATCACGGAAAGGAAGAGATCC 27553 Query 110839 GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAG 110898 | ||||| || | || || ||||||| | ||| | |||||||| || ||| | Sbjct 27554 GTGCACGAGACCTGTTCCTGGCTCTGTGGATCCCTGATCTCTTCATGAAGCGCGTTGAGA 27613 Query 110899 AAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATG 110958 | || | | ||| |||| ||||| ||| | | ||||| || |||| || | Sbjct 27614 AGAACGAGAACTGGACTCTCATGTGCCCTAACGAGTGCCCTGGCCTGGCTGACTGCTACG 27673 Query 110959 GAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG 111001 | | |||||||| | ||| ||||| || |||||||| || || Sbjct 27674 GCGAGGAGTTTGAGGCCCTATACGAGAAGTATGAAAAGGAGGG 27716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186800832847307