Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq127 118 1e-21 seq9 95.1 1e-14 >seq127 Length=80722 Score = 118 bits (130), Expect = 1e-21 Identities = 378/579 (65%), Gaps = 12/579 (2%) Strand=Plus/Minus Query 147246 CTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGAT 147305 |||| ||||||| |||||| || || ||||| || | |||||| | ||| | || || Sbjct 28146 CTCGAAAGGCATGCGCAGAGCCAAGAATGCATCTGCAAGACCCTGAACACCAAGACCAAT 28087 Query 147306 AGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGATCA 147363 |||||||| ||||||| | || || || | ||| |||| |||| ||| Sbjct 28086 GGGTCGATGACGCATGTTGCTGT--TGCGTGCCTCCTGAACGGGGTAGTAGTTGACATCG 28029 Query 147364 ATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCA 147423 || || ||| ||||||||||| | ||| || | | | ||| |||| ||| | Sbjct 28028 ATGATACGGTTCAGGTTACGCACGATAACCCGTGTAACTTCGTGGAGCTTCTTGAAGTTG 27969 Query 147424 TA--AGTCC-CGTCTTCGACA-CGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCA 147479 || || || |||| | || |||| || || || || | || ||||| ||||| Sbjct 27968 TAGCAGCCCTCGTCGTAATCAACGTAGGCG--GG--CAGAGCCAGCGAAGCCAGGTTGCA 27913 Query 147480 GACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTT 147539 || || ||| |||| ||| ||| | | || || | ||| || ||| || Sbjct 27912 AACAGCAACCTCATCGGGAGCGCAGTATTCAATAATCTCAGTGCAAAGATTGGAGCTGCG 27853 Query 147540 TATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTA 147599 || |||| || | ||| ||||| || || ||||| || || ||| | |||||| | Sbjct 27852 GATAGTACCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCTTGTAAAGCATGAA 27793 Query 147600 CGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGCAGGTCCTGCGCTCGCAC 147659 || || |||||| ||| | ||| | ||| | ||| | ||| || || | Sbjct 27792 GGGGTTACCAGTCTCGGTTTGGGCTTCGAGGATCGAGTACCACAGCTTCTGGGCACGGAT 27733 Query 147660 CCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCC 147719 | ||| ||| || ||||| ||||| ||| |||||| | ||||||||| ||||| Sbjct 27732 CGTCTGACGACCACGACCCTCCTTTTCATACTTCTCGTATAGGGCCTCAAACTCCTCGCC 27673 Query 147720 GTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGC 147779 |||||| || || ||||| || |||| | || ||||| || | ||| | |||| | Sbjct 27672 GTAGCAGTCAGCCAGGCCAGGGCACTCGTTAGGGCACATGAGAGTCCAGTTCTCGTTCTT 27613 Query 147780 GTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGC 147818 | |||||| ||| || ||||| || | |||||| || Sbjct 27612 CTCAACGCGCTTCATGAAGAGATCAGGGATCCACAGAGC 27574 >seq9 Length=1081052 Score = 95.1 bits (104), Expect = 1e-14 Identities = 328/503 (65%), Gaps = 9/503 (2%) Strand=Plus/Minus Query 46770 CGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACGCTGGCCGAG 46829 ||||| |||||| ||||||| || |||||| || | ||| |||| | || || Sbjct 1020491 CGCAAGAAGGCCGAGTGGGCAATTCGCTGGATCCAGGACAAGAAATCCACATTCGCTCAG 1020432 Query 46830 CGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATT 46889 || | || || ||||| ||||| ||| | || || || ||| || | ||| Sbjct 1020431 CGTCTTGTTGCCTTCGCCGCCGTCGAGGGCATCTTCTTCAGTGGTGCTTTCGCTTCTATT 1020372 Query 46890 TTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCG 46949 || | | || | || | ||||| || || || ||| |||||| ||||||| Sbjct 1020371 TTCTGGTTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCTCC 1020312 Query 46950 CGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAG 47009 || ||||| || || ||||| ||||| || || || | | || | | |||| | Sbjct 1020311 CGTGACGAGGGTCTTCACACTGACTTCGCTTGCCT--ACTCCACTCCCATC-TGAACAAC 1020255 Query 47010 AAATTAAACTCGGACACGATCCTGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAG 47069 || | ||| || |||||| | | || || || | ||| || |||||| Sbjct 1020254 CGCGCAAGCAAGGAGGTCATTGAGAGCATCATCACTGACGCCGTCACCATTGAGAAGGAG 1020195 Query 47070 TTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAGTCT-ATGTGCGA 47128 || || |||| ||| || || |||| |||||||||||||||| || || ||| | Sbjct 1020194 TTCTTGACTGAGGCCCTTCCTTGCGCCATGCTGGGCATGAACGC-CAACCTGATGAAGCA 1020136 Query 47129 ATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAA 47188 || || |||||||| || || ||||| |||| ||||| ||| ||| | | || Sbjct 1020135 GTACATCGAGTTTGTTGCCGACCGTCTTCTGGTCGCTCTCGG-CAA-CGACAAGGTGTAC 1020078 Query 47189 TGCTCG--TAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTT 47246 ||| || || || || || ||| | ||||| || || | ||||||||||| || Sbjct 1020077 AAGTCGACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGAGGCAAAACCAACTTC 1020018 Query 47247 TTCGAGAAACGAGTCGGAGAGTA 47269 |||||||| || ||||| || || Sbjct 1020017 TTCGAGAAGCGCGTCGGTGACTA 1019995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476606511337320