Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq9 125 1e-22 >seq9 Length=1081052 Score = 125 bits (138), Expect = 1e-22 Identities = 210/300 (70%), Gaps = 13/300 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||| ||| || || || ||||| || ||||| |||| | Sbjct 1020889 GATCTGGCAAATGTAC-AAGAAGCACGAAGCTTCTTTCTGGACTGCTGAGGAAATCGATC 1020831 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| | | ||| ||| ||||||||| | ||| Sbjct 1020830 TGTCCAAGGATCTCCACG----ACTGGCACACCCGTATGAACGATGACGAGCGCTACTTC 1020775 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 || ||||| || ||||| || ||| ||| |||||||| || |||||||||| Sbjct 1020774 GTCTCTCACGTTCTTGCCTTCTT-CGCTGCCTCTGATGGCATTGTCAATGAGAACCTGGT 1020716 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 | ||||| | |||||||| | || ||||| |||| || ||||| |||||||| Sbjct 1020715 TGAGCGCTTCAGCGCTGAGGTCCAGATTCCTGAGGCTCGTTGCTTCTACGGATTCCAGAT 1020656 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 || || ||||||||||| || |||||||| ||||| || ||||| ||| ||||||| Sbjct 1020655 TATGATGGAGAACATCCACTCAGAGACCTACTCCCTCCTCATTGACACATACATCAAGGA 1020596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177735292403494