Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq87 107 2e-18 seq6 95.1 1e-14 >seq87 Length=157873 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || |||| || |||||||| || || || Sbjct 70616 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 70557 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || |||||||||| |||||| ||| | || Sbjct 70556 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 70498 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| || |||||||| | ||||| || || ||||| | || || | Sbjct 70497 TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCCGTGAGGGTCTTGA 70438 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 70437 CGAAAATCTGCAT 70425 >seq6 Length=1479970 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || | | ||| || |||| || |||||||| || || || Sbjct 795426 CTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTCTTCAAGCTGCTTTCCAGCGAA 795485 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | ||| | | |||||| ||| |||||| ||||| | | Sbjct 795486 GATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGGATCTTCGACTTCACATT 795545 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| || || || |||| ||||| || || || || | || || || Sbjct 795546 GTCAATCGTGTCCGATGACTCGACTTCCAGTGTGATAGTCTTTCCGGTGAGGGTCTTGAC 795605 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 795606 GAAAATCTGCAT 795617 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || | || || ||||||||||| || || Sbjct 795940 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAA 795999 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||| ||||| | ||||| | |||||||||| ||||| ||| | | | Sbjct 796000 AATCAGGCGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGAATCTTCGACTTGACATT 796059 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || || ||||| | ||||| || || || || | || || || Sbjct 796060 GTCGATGGTATCAGAAGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGAC 796119 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 796120 GAAAATCTGCAT 796131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450789165317960