Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq127 183 4e-41 seq9 91.5 2e-13 >seq127 Length=80722 Score = 183 bits (202), Expect = 4e-41 Identities = 500/758 (66%), Gaps = 12/758 (2%) Strand=Plus/Minus Query 69277 GATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA-TATTGTATTATCTCTGTACA 69335 || || || || ||||| || ||||||| | | ||| |||| || ||||| || || Sbjct 27926 GAAGCCAGGTTGCAAACAGCAACCTCATCGGGAGC-GCAGTATTCAATAATCTCAGTGCA 27868 Query 69336 TAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTC 69395 ||||| | |||||| ||||| || | ||| || ||||| ||| || || || Sbjct 27867 AAGATTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATC 27808 Query 69396 CTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAAC 69455 ||||||||| || || || ||||||| || | || | ||||| || || | ||| | Sbjct 27807 CTTGTAAAGCATGAAGGGGTTACCAGTCTCGGTTTGGGCTTCGAGGATCGAGTACCACAG 27748 Query 69456 GACCCTAGCATTTATTACGGTCTTGTAAC---GCTTCTCTTTTTCATA-TTGT-GTATAT 69510 | ||| || |||| || | ||| |||||||| || | ||||| Sbjct 27747 CTTCTGGGCACGGATC---GTCTGACGACCACGACCCTCCTTTTCATACTTCTCGTATAG 27691 Query 69511 AGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATC 69570 ||| || || || || || | ||| ||| ||||| || || || || ||||| Sbjct 27690 GGCC--TCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTAGGGCACATG 27633 Query 69571 AATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCT 69630 | | ||| || | | || ||| || ||||| || ||||| || ||||| ||||| Sbjct 27632 AGAGTCCAGTTCTCGTTCTTCTCAACGCGCTTCATGAAGAGATCAGGGATCCACAGAGCC 27573 Query 69631 ATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAAC 69690 | || || |||| | | | ||||| ||||| ||| ||| ||| || |||||| Sbjct 27572 AGGAACAGGTCTCGTGCACGGATCTCTTCCTTTCCGTGATTCTTTCGAAGGTCCAGAAAC 27513 Query 69691 TCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTT 69750 || | | |||||| ||||| || || ||||| || || | | | || || || || || Sbjct 27512 TCGAAGACATCAGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCGGGGCGCTTGTTG 27453 Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || |||||||| | |||||||||||||| || | |||| |||||| || || || ||| Sbjct 27452 CCACCCTGATCAACATATCTGGCAGTGTTGTTGAACACTCGCAGCATGGGGATGATTCCA 27393 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | || || || || | ||| || ||| | || ||||| || Sbjct 27392 TTGGATGTGCCGTTGGTACCGGCAATGTACGAGCCTGTAGCACGAATGCGGTGAACGTTG 27333 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 ||||| || ||||||||||| || ||||| | ||||| || | || || || ||| Sbjct 27332 AGACCGATACCTCCTGCCATCTTTGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATA 27273 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATA 69990 || || ||||| ||||| |||| | | ||| || || || | ||| || Sbjct 27272 CCGTCAATGCTGTCATCCTTCATATCGACAAGGAAGCATGATGAGAGCTGAGCCTGGGGG 27213 Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAA 70028 || || ||||| |||| || ||||| || ||||| || Sbjct 27212 GTACCGGCATTGAATAGAGTGGGAGAAGCATGAGTAAA 27175 >seq9 Length=1081052 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 39613 TAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGT 39672 || ||| ||||||||| || || ||||| || | || | ||||| || || || Sbjct 1020276 TAGGCAAGCGAAGTCAGTGTGAAGACCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGT 1020335 Query 39673 GAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAA 39732 ||| |||||||| ||||||||||| || | ||| || || | ||| |||| ||| || Sbjct 1020336 GAGACCAGGCATCAGACCACGCTTCTTCAACCAGAAAATAGAAGCGAAAGCACCACTGAA 1020395 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765 ||||||||| || || || || || |||||||| Sbjct 1020396 GAAGATGCCCTCGACGGCGGCGAAGGCAACAAG 1020428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686902042534680