Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq127 194 2e-44 seq9 89.7 6e-13 >seq127 Length=80722 Score = 194 bits (214), Expect = 2e-44 Identities = 940/1466 (64%), Gaps = 43/1466 (3%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | |||||| || || ||||||||||| || |||||||| || | ||| Sbjct 28461 GTAGATGTTGGATGTGTAGGGCTCGAAGCATTCATTGTTGCCCAAGATCTGAGAGGTACT 28402 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 |||||| ||||| || |||| | |||||||| || | ||| | ||| ||||| | || Sbjct 28401 GGCTGTGGGCATAGGAGCCACGAGCAGACTGTTGCGGATACCGTGCTCTTTGATCTGCTC 28342 Query 110827 CTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGA 110884 || ||||| | | || | || || | || || ||||||||| |||||| Sbjct 28341 TCGAAGCGTCTCCCACTCCCAAAGGTCAG-AGGGGGTGACATT-CCACATGTCGAACTGA 28284 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | || | || || || || |||| ||||| | |||| |||||| | | || Sbjct 28283 AGGATTCCCTCTGAAGCTGGGGATCCCTTGAAGGTCTGGTAGGGACCTTGCTCCTTCGCG 28224 Query 110945 AATTCACAGCTCGCCTC---CAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 111001 | ||| || | | ||| |||| || || || || || || ||||| | |||| Sbjct 28223 AGTTC-CA--TGGACTCAGTAAGGGCGGCATGGTAGATTGTCTCGAAGATCTGCTTATTC 28167 Query 111002 ATCTCCTTGGCTTCATCTGAATC-AAATGCGTAGCGGCACA-AAATAAATACATCCGCGA 111059 | || || ||| || || ||| || | || ||| | | ||| |||| || | Sbjct 28166 AGCTGACGAGCCTCAGGCGACTCGAAAGGCAT-GC-GCAGAGCCAAGAATGCATCTGCAA 28109 Query 111060 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAA 111119 |||| |||||||| | |||||| |||| || ||||| || || || || || || Sbjct 28108 GACCCTGAACACCAAGACCAATGGGTCGATGACGCATGTTGCTGTTGCGTGCCTCCTGAA 28049 Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179 |||| || | || || |||| ||||| || || | || | ||| | || Sbjct 28048 CGGGGTAGTAGTTGACATCGATGATACGGTTCAGGTTACGCACGATAACCCGTGTAACTT 27989 Query 111180 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 111239 | || || || | | | | || || | || || || || || || | Sbjct 27988 CGTGGAGCTTCTTGAAGTTGTAGCAGCCCTCGTCGTAATCAACGTAGGCGGGCAGAGCCA 27929 Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299 || |||| ||||||||||| |||||| | | ||| || | ||| || || | Sbjct 27928 GCGAAGCCAGGTTGCAAACAGCAACCTCATCGGGAGCGCAGTATTCAATAATCTCAGTGC 27869 Query 111300 ATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCAT 111359 | | ||||| || || || |||| ||||| ||||| ||||| |||||| |||| Sbjct 27868 AAAGATTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCAT 27809 Query 111360 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-A 111418 ||||||| |||||| |||| | || ||||| || || | || ||| || | | ||| | Sbjct 27808 CCTTGTAAAGCATGAAGGGGTTACCAGTCTCGGTTTGGGCTTCGAGGATCGAGTACCACA 27749 Query 111419 ACATCGG----CGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTA 111474 | || | ||| | || || || | || |||||| || ||||| ||| Sbjct 27748 GCTTCTGGGCACGGATCGT---CTGACG--ACCACGACCCTCCTTTTCATACTTCTCGTA 27694 Query 111475 GAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAA 111534 ||||| ||||||||||| || ||| | || || || || || || || | Sbjct 27693 TAGGGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTAGGGCACAT 27634 Query 111535 AAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG 111593 |||| ||| || | ||| |||||| ||||||||||| || || || |||||||| | Sbjct 27633 GAGAGTCCAGTTCTCGTTCTT-CTCAACGCGCTTCATGAAGAGATCAGGGATCCACAGAG 27575 Query 111594 ATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGG 111652 || || |||| | ||| || |||||| | || || || ||| | || || Sbjct 27574 CCAGGAACAGGTCTCGTGCACGGA-TCTCTTCCTTTCCGTGATTCTTTCGAAGGTCCAGA 27516 Query 111653 AACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCG 111708 ||||| | || ||| | |||||| ||||| ||||||| || | | || | | | Sbjct 27515 AACTCGAAGACATCAGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCGGGGCGCTTG 27456 Query 111709 ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 111768 | ||| | |||| ||||| | || ||| ||| || || || ||||| || || || Sbjct 27455 TTG-CCACCCTGATCAACATATCTGGCAGTGTTGTTGAACACTCGCAGCATGGGGATGAT 27397 Query 111769 ACCATCTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGCTCTCACATCATGG 111826 |||| ||| || || || || || |||||| | | || | | || Sbjct 27396 TCCATTGGATGTGCCGTTGGTACCGGCAATGTACGAGCCT--GTAGCACGAATGCGGTGA 27339 Query 111827 ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 111886 | || | || ||||| || ||| ||||||||| ||||| | | ||||| | Sbjct 27338 ACGTTGAGACCGATACCTCCTGCCATCTTTGAGATCATGGCACAGGTCTTGAGAGTATCG 27279 Query 111887 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 111946 |||||||||| || ||| ||||| | ||| ||||||||| || | ||| | Sbjct 27278 TAGATACCGTCAATGCTGTCATCCTTCATATCGACAAGGAAGCATGATGAGAGCTGAGCC 27219 Query 111947 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACAT 112005 || ||||| |||||||| || || || | || ||| | || | || | | |||||| Sbjct 27218 TGGGGGGTACCGGCATTGAATAGAGTGGGAGAAGCATGAGTAAAGA-ACTTGTTGGACAT 27160 Query 112006 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCG 112065 | || ||| ||||| | |||| ||||||| || || || || | | || || Sbjct 27159 GTAGTTGTAGGTCTCGATGACACGTTCAATGTTATCACCCCAAATACCCACAGAAACACG 27100 Query 112066 CATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGATAGCTC 112123 ||||| ||||| |||||| || | | |||| | |||| |||| |||||| Sbjct 27099 CATGATCATGTGTTGTGGGCGCTCAACAATCTTGCCGTTGAGC--TTGAGGAGATAGGAA 27042 Query 112124 TTCTCAAGGGTTTTGAGACCAAAGTA 112149 ||| || || |||| ||| ||||| Sbjct 27041 CGCTCCAGTGTCTTGAAACCGAAGTA 27016 >seq9 Length=1081052 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| |||||||| || ||||| || || || || |||||| ||||| ||||| ||||| Sbjct 1020294 GTGAAGACCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCAGACC 1020353 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||||||||| |||||| ||| | || ||||||||| ||||| || Sbjct 1020354 ACGCTTCTTCAACCAGAAAATAGAAGCGAAAGCACCACTGAAGAAGATGCCCTCGACGGC 1020413 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAA 122816 || || |||| ||| || | ||||| Sbjct 1020414 GGCGAAGGCAACAAGACGCTGAGCGAA 1020440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628025821735200