Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq127 201 1e-46 seq9 122 1e-22 >seq127 Length=80722 Score = 201 bits (222), Expect = 1e-46 Identities = 899/1397 (64%), Gaps = 39/1397 (3%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| |||| ||||| ||||| ||||| |||||||| |||||||| || | || | Sbjct 28460 TAGATGTTGGATGTGTAGGGCTCGAAGCATTCATTGTTGCCCAAGATCTGAGAGGTACTG 28401 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 ||||||||||| || |||| ||| || ||||| |||| ||| | || | || | | | Sbjct 28400 GCTGTGGGCATAGGAGCCACGAGCAGACTGTTGCGGATACCGTGCTCTTTGATCTGCT-C 28342 Query 118302 TTGAGAGCG--TCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTG 118357 | || |||| ||||| | | || | || | | | |||||| || ||||| Sbjct 28341 TCGA-AGCGTCTCCCACTCCCAAAGGTCAG--AGGGGGTGACATTCCACATGTCGAACTG 28285 Query 118358 GAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC 118417 ||||| || | || ||||| ||||||| || |||| || || || | ||| ||| Sbjct 28284 AAGGATTCCCTCTGAAGCTGGGGATCCCTTGAAGGTCTGGTAGGGACCTTGCTCCTTCGC 28225 Query 118418 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCA- 118476 | ||| | | | ||||| || || || ||||| || || || | ||||| Sbjct 28224 GAGTTCCATGGACTCAGTAAGGGCGGCATGGTAGATTGTCTCGAAGATCTGCTTATTCAG 28165 Query 118477 TTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACA-AAATAAATACATCCGCGAGA 118535 || | ||||| || || || | | | ||| | | ||| |||| || ||| Sbjct 28164 CTGAC-GAGCCTCAGGCGACTCGAAAG-GCATGCGCAGAGCCAAGAATGCATCTGCAAGA 28107 Query 118536 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACG 118595 || || ||||| || ||||| || ||||| | ||| || || || || || ||| Sbjct 28106 CCCTGAACACCAAGACCAATGGGTCGATGACGCATGTTGCTGTTGCGTGCCTCCTGAACG 28047 Query 118596 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 118655 || || | || |||||| | | || || || || |||| ||| | ||| Sbjct 28046 GGGTAGTAGTTGACATCGATGATACGGTTCAGGTTACGCACGATAACCCGTGTAACTTCG 27987 Query 118656 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 118715 || ||||| | | | | | | || || | || || || || || || | Sbjct 27986 TGGAGCTTCTTGAAGTTGTAGCAGCCCTCGTCGTAATCAACGTAGGCGGGCAGAGCCAGC 27927 Query 118716 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCAC 118775 || ||||| || || |||| |||||| | | ||| || ||||| || ||||| Sbjct 27926 GAAGCCAGGTTGCAAACAGCAACCTCATCGGGAGCGCAGTATTCAATAATCTCAGTGCAA 27867 Query 118776 AAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 118835 | || || || || || |||| |||||| || || ||| ||| || |||||| Sbjct 27866 AGATTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCC 27807 Query 118836 TTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACA 118895 |||||||||||| | || | || ||||| ||||||| | ||| || | | || ||| Sbjct 27806 TTGTAAAGCATGAAGGGGTTACCAGTCTCGGTTTGGGCTTCGAGGATCGAGTACC--ACA 27749 Query 118896 TCGGCAGCTGGCACAGTGGCGT-TG----GCTCGCCCCTCTTCCTCGTACTTTGTGTAGA 118950 | | | ||||| | ||| || | || ||||| | || ||||| ||| | Sbjct 27748 GCTTCTG--GGCAC-GGATCGTCTGACGACCACGACCCTCCTTTTCATACTTCTCGTATA 27692 Query 118951 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 119010 |||| |||||||| || || | || | || || || || | ||||| | || Sbjct 27691 GGGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTAGGGCACATGA 27632 Query 119011 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 119070 ||| ||| | | || |||||| |||||||||||||| || |||||||| || ||| Sbjct 27631 GAGTCCAGTTCTCGTTCTTCTCAACGCGCTTCATGAAGAGATCAGGGATCCACAGAGCCA 27572 Query 119071 AGAAGAGATCCCG-ACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 119129 ||| || || || || || | ||||| | || ||||| || | |||| ||| Sbjct 27571 GGAACAGGTCTCGTGCACGGATC-TCTTCCTTTCCGTGATTCTTTCGAAGGTCCAGAAAC 27513 Query 119130 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTACGA 119183 || | || ||| | |||||| || || || || | || | | || | ||| | Sbjct 27512 TCGAAGACATCAGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCGGGGCGCTT--GT 27455 Query 119184 CGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATA 119243 | ||| |||| | ||||| || |||||| ||| || || || ||||| || ||||| Sbjct 27454 TG-CCACCCTGATCAACATATCTGGCAGTGTTGTTGAACACTCGCAGCATGGGGATGATT 27396 Query 119244 CCATCGGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCGTGGA 119301 |||| |||| ||| || || || || |||||| || | || | | ||| | Sbjct 27395 CCATTGGATGTGCCGTTGGTACCGGCAATGTACGAGCCT--GTAGCACGAATGCGGTGAA 27338 Query 119302 TGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGT 119361 || | ||| ||||| |||||| ||||||||| || || | ||||| | ||| Sbjct 27337 CGTTGAGACCGATACCTCCTGCCATCTTTGAGATCATGGCACAGGTCTTGAGAGTATCGT 27278 Query 119362 AGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCC 119421 |||| || || || |||| |||| | ||| |||||||| || | |||| | Sbjct 27277 AGATACCGTCAATGCTGTCATCCTTCATATCGACAAGGAAGCATGATGAGAGCTGAGCCT 27218 Query 119422 TGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATC 119480 ||| ||||| || ||||| ||||| || | || || | || | || | | |||||| Sbjct 27217 GGGGGGTACCGGCATTGAATAGAGTGGGAGAAGCATGAGTAAAGA-ACTTGTTGGACATG 27159 Query 119481 TTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGC 119540 | || ||||||||| | ||| ||||| || || |||||| | || || ||| Sbjct 27158 TAGTTGTAGGTCTCGATGACACGTTCAATGTTATCACCCCAAATACCCACAGAAACACGC 27099 Query 119541 ATAAACATGTATTGGGG 119557 || | ||||| ||| || Sbjct 27098 ATGATCATGTGTTGTGG 27082 >seq9 Length=1081052 Score = 122 bits (134), Expect = 1e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| |||||||||||||||||||| || || || |||||| ||||| ||||| ||||| Sbjct 1020294 GTGAAGACCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCAGACC 1020353 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||||||||||||||| | | || | ||| ||||||||| ||||| || Sbjct 1020354 ACGCTTCTTCAACCAGAAAATAGAAGCGAAAGCACCACTGAAGAAGATGCCCTCGACGGC 1020413 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAA 130173 ||||| |||| ||||||| ||| || Sbjct 1020414 GGCGAAGGCAACAAGACGCTGAGCGAA 1020440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618429116143720