Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq127 264 1e-65 seq7 113 5e-20 seq9 107 2e-18 >seq127 Length=80722 Score = 264 bits (292), Expect = 1e-65 Identities = 914/1400 (65%), Gaps = 43/1400 (3%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 |||||| ||||| ||||||| || | | |||||| || || ||||||| ||| Sbjct 27081 CCCACAACACATGATCATGCGTGTTTCTGTGGGTATTTGGGGTGATAACATTGAACGTGT 27140 Query 104281 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | | ||||| ||| || | |||||| | | || | || | ||| || | || || || | Sbjct 27141 CATCGAGACCTACAACTACATGTCCAACAAGT-TCTTTACTCATGCTTCTCCCACTCTAT 27199 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 ||||||| ||||| || | || | || ||||||||| ||| | ||||| | Sbjct 27200 TCAATGCCGGTACCCCCCAGGCTCAGCTCTCATCATGCTTCCTTGTCGATATGAAGGATG 27259 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || || |||||||||| | ||||| | | ||||| ||||||||| ||| | Sbjct 27260 ACAGCATTGACGGTATCTACGATACTCTCAAGACCTGTGCCATGATCTCAAAGATGGCAG 27319 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGGGAC 104517 | ||||| || | || | || | | || | | |||||| || || || Sbjct 27320 GAGGTATCGGTCTCAACGTTCACCGCATTCGTGCTAC--AGGCTCGTACATTGCCGGTAC 27377 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 || || ||| |||| || || || ||||| || || || ||| ||| || | || Sbjct 27378 CAACGGCACATCCAATGGAATCATCCCCATGCTGCGAGTGTTCAACAACACTGCCAGATA 27437 Query 104578 TGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 ||| |||| | ||| | | | | || | | || ||||||| ||||| |||| Sbjct 27438 TGTTGATCAGGGTGG-CAACAAGCGCCCCGGTGCCTTTGCTATCTATCTCGAGCCCTGGC 27496 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 || | ||| || | ||||| || || | || || || || | || ||| || | Sbjct 27497 ACTCTGATGTCTTCGAGTTTCTGGACCTTCGAAAGAATCACGGAAAGGAAGAGATCCG-T 27555 Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || || || || ||| ||||| ||||| || ||||||||||||||| | |||||| || Sbjct 27556 GCACGAGACCTGTTCCTGGCTCTGTGGATCCCTGATCTCTTCATGAAGCGCGTTGAGAAG 27615 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812 | | || ||| ||||| | || || || || ||||| || | || | || Sbjct 27616 AACGAGAACTGGACTCTCATGTGCCCTAACGAGTGCCCTGGCCTGGCTGACTGCTACGGC 27675 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGG--CGACTG-CGA-C 104868 ||||||||||| ||||| ||| ||||| || | || ||||| | || | | ||| | Sbjct 27676 GAGGAGTTTGAGGCCCTATACGAGAAGTATGAAAAGGAGGGTCGTGGTCGTCAGACGATC 27735 Query 104869 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 ||||| | || | ||||| | | || ||| | | |||||||||||||||| | Sbjct 27736 CGTGCC-----CAGAAGCTGTGGTACTCGATCCTCGAAGCCCAAACCGAGACTGGTAACC 27790 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | | |||||||||||| || || || |||| ||||| || || ||||| ||||| | Sbjct 27791 CCTTCATGCTTTACAAGGATGCTTGCAACCGTAAGAGCAACCAGAAGAACCTGGGTACTA 27850 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047 || || |||||||| || || || || | |||| | |||||| |||| Sbjct 27851 TCCGCAGCTCCAATCTTTGCACTGAGATTATTGAATACTGCGCTCCCGATGAGGTTGCTG 27910 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC--ATT 105105 | || ||||| || || | ||||| ||| || || ||| ||| | | | | Sbjct 27911 TTTGCAACCTGGCTTCGCTGGCTCTGCCCGCCTACGTTGAT--TACGACGAGGGCTGCTA 27968 Query 105106 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTAT 105165 | | | || |||||||||||||| | || ||||| ||| | | || Sbjct 27969 CAACTTCAAGAAGCTCCACGAAGTTACACGGGTTATCGTGCGTAACCTGAACCGTATCAT 28028 Query 105166 TGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 105225 ||| || | ||||||||| || || || || || ||| | || || || || Sbjct 28029 CGATGTCAACTACTACCCCGTTCAGGAGGCACGCAACAGCAACATGCGTCATCGACCCAT 28088 Query 105226 TGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTT-GAT 105283 |||||| |||||||||||||| || |||| |||| | || || || || || ||| || Sbjct 28089 TGGTCTTGGTGTTCAGGGTCTTGCAGATGCATTCTTGGCTCTG-CG-CATGCCTTTCGAG 28146 Query 105284 TCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTT 105343 || || || | | ||| || || || ||||| || || || ||||| ||| Sbjct 28147 TCGCCTGAGGCTCGTCAGCTGAATAAGCAGATCTTCGAGACAATCTACCATGCCGCCCTT 28206 Query 105344 GAGGCGAGTTCA--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 105401 |||| || || | || ||| | ||||| || | ||||| |||| || | Sbjct 28207 --ACTGAGTCCATGGAACTCGCGAAGGAGCAAGGTCCCTACCAGACCTTCAAGGGATCCC 28264 Query 105402 CAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC----AAGCTTCAC 105457 |||||||| | || | ||||| || || |||| |||| || | || | ||| Sbjct 28265 CAGCTTCAGAGGGAATCCTTCAGTTCGACATGT-GGAATGTCACCCCCTCTGACCTT--- 28320 Query 105458 TACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTC 105517 | || ||||| | || || | ||||| ||| | ||| | || |||||||| ||| Sbjct 28321 TGGGAGTGGGAGACGCTTCGAGAGCAGATCAAAGAGCACGGTATCCGCAACAGTCTGCTC 28380 Query 105518 ATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 105577 ||||||| ||||| |||||| ||| | || |||||||| || ||||||||||| || Sbjct 28381 GTGGCTCCTATGCCCACAGCCAGTACCTCTCAGATCTTGGGCAACAATGAATGCTTCGAG 28440 Query 105578 CCCTACACGACGAACATCTA 105597 |||||||| | |||||||| Sbjct 28441 CCCTACACATCCAACATCTA 28460 >seq7 Length=1388246 Score = 113 bits (124), Expect = 5e-20 Identities = 317/481 (66%), Gaps = 28/481 (6%) Strand=Plus/Plus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 ||||| ||||||||||| | ||||| | || | || ||| | || || || |||| Sbjct 655997 TCAAAACGACCTGGACGCATCAGCGCCTTGTCCAAGACGTCAGCACGGTTGGTACCGGCC 656056 Query 9587 ATGACAACAATACCTGTTTC--ATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644 | || |||| |||| | | | ||| ||||||||||| ||||| | || ||||| | Sbjct 656057 AGAACCACAA--CCTGCTCCCGAGTATTGAAACCATCCATTTCTGTGAGAATCTGGTTGA 656114 Query 9645 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTT------TC 9698 || ||| |||||||| || || | ||||| | |||| || | || Sbjct 656115 GTGTAGCTTCTCGTTCATCGTTGCCTCCGAAACCACGACCACTCTCCTGTCTCGCGCGTC 656174 Query 9699 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAA 9758 | | |||||| || || |||||||||| ||||| || || | | | | | | Sbjct 656175 CAATGGCATCGATTTCGTCAATGAAGATAATGCAAGGAGCGTTCTTCCTTCCCTCCGCGA 656234 Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818 |||| || |||||||| | || |||||||||||||| || ||||| | | | Sbjct 656235 AGAGGTCTCGTACACGAGATGGACCGACACCAACAAACATTTCTACAAATT------CAG 656288 Query 9819 AAC-ATTG-----GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872 ||| | || || |||||| || || || || ||| | || ||| ||||||| Sbjct 656289 AACCACTGACGCTGAAGAAGGGCACGCCTGACTCTCCTGCAGTAGCCTTGGCAAGAAGAG 656348 Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACT 9930 ||||||| || || || || || |||| |||||| || ||||||||||| || || Sbjct 656349 TCTTACCGGTTCCAGGAGGCCCGGCCAGGATGGCACCACGAGGAATCTTGGCACCTAGCT 656408 Query 9931 TC-CAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGG 9989 || | || | |||| || ||||| || ||| ||| | ||| | |||| | |||| Sbjct 656409 TCTCGAACT---TCTCTGGCTGCTTGAGGAAACTCACGAATTCCATGATTTCAACCTTGG 656465 Query 9990 C 9990 | Sbjct 656466 C 656466 >seq9 Length=1081052 Score = 107 bits (118), Expect = 2e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| ||||||||| |||| | ||| |||||| ||| | |||||||| ||| Sbjct 1020410 GTCGAGGGCATCTTCTTCAGTGGTGCTTTCGCTTCTATTTTCTGGTTGAAGAAGCGTGGT 1020351 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 || ||||| |||||| ||||||||||||||| ||||| ||||||||||| || ||| Sbjct 1020350 CTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCTCCCGTGACGAGGGTCTTCAC 1020294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583255062171880