Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq4 215 2e-50 seq6 170 6e-37 seq5 95.1 4e-14 seq87 86.0 2e-11 >seq4 Length=1629322 Score = 215 bits (238), Expect = 2e-50 Identities = 698/1074 (65%), Gaps = 11/1074 (1%) Strand=Plus/Minus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || ||||| ||||| || |||||| |||| || || || | ||| || || || || Sbjct 1499845 GACATCATTGCCAATGACCAGGGTAACCGAACCACCCCTTCTTTCGTGGCCTTCACAGAC 1499786 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| | || |||||| | || || || |||| || || || | || || Sbjct 1499785 ACCGAGCGTCTTATCGGTGATGCCGCCAAGAACCAAGTCGCCATGAACCCCCACAACACA 1499726 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACAATCTG 349439 || || || || ||||| || || || | | ||||| || | | | || | | Sbjct 1499725 GTCTTCGACGCCAAGCGTCTGATCGGCCGCAAGTTTTCAGATGCTGAGGTCCAGG--CCG 1499668 Query 349440 ATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGG 349499 | | || || || || || | | | || | ||| |||| || || | | |||| Sbjct 1499667 ACATGAAGCACTTCCCCTTCAA-GATCATCGAGAAG--GGTGGCAAGCCCGTCGTCGAGG 1499611 Query 349500 TTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAG 349559 | || | || || || || ||||| ||||| || || || || ||| | | Sbjct 1499610 TCGAGTTCAAGGGAGAGACCAAGCAATTCACTCCCGAGGAGATCTCCTCGATGATCCTCA 1499551 Query 349560 TTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTA 349619 || ||| || | || || || || | |||| || || | | ||||| ||| Sbjct 1499550 CCAAGATGCGTGAGACCGCCGAGGCCTACCTCGGTGGCACCGTCAACAACGCTGTCGTTA 1499491 Query 349620 CTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTG 349679 | || || ||||| || || || | |||||| || || || || || || ||||| Sbjct 1499490 CCGTCCCCGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGACGCCGGTCTCATTG 1499431 Query 349680 CGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGC 349739 | || | || || || | || || || || || ||||| || || ||||| || || | Sbjct 1499430 CCGGTCTCAACGTCCTCCGTATCATCAACGAGCCTACTGCCGCTGCCATTGCCTACGGTC 1499371 Query 349740 TTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTT 349799 | || || | || ||| || ||| |||| || || ||| | ||||||||||| | Sbjct 1499370 TCGACAAGAAGATTGAGGGCGAGCGCAATGTTCTCATCTTCGATCTCGGTGGTGGTACCT 1499311 Query 349800 TTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859 | ||||| || || || || | || || || || || || || || | |||||||||| Sbjct 1499310 TCGATGTCTCTCTCCTCACCATCGAGGAAGGTATCTTCGAGGTCAAGTCCACTGCTGGTG 1499251 Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAAT 349919 | ||||||||||| |||||||| ||||| || ||||| || ||||| ||||| |||| Sbjct 1499250 ACACACATCTTGGAGGAGAAGACTTTGACAACCGTCTGGTCAACCATTTCGTTAATGAAT 1499191 Query 349920 TTAAGCGTCAAG-CTAAAATTGATATTGGAGA-TAATCCTAGAGCAATGCGTCGCCTAAG 349977 | ||||| |||| || | ||| |||| | || || | || |||| || || | Sbjct 1499190 TCAAGCG-CAAGAACAAGAAGGAT-TTGGCTACCAACTCTCGTGCTCTGCGCCGTCTTCG 1499133 Query 349978 AACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAAT 350037 ||||| || || ||||| |||||| || | || ||| | |||| ||||| ||||| || Sbjct 1499132 CACTGCTTGCGAGCGTGCCAAGCGTACCCTCTCTTCTTCCGCCCAGACCTCCATTGAGAT 1499073 Query 350038 TGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGA 350097 || |||||| || || | || |||| | || || || |||||||| || ||||| Sbjct 1499072 CGACTCTCTTTTCGAGGGTATTGACTTCTACACCTCCATCACTCGTGCTCGTTTCGAAGA 1499013 Query 350098 ATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGC 350157 | || ||| || || | | || || | || || || || | || || Sbjct 1499012 GCTCTGCCAGGACCTCTTCCGCTCCACCATCCAGCCCGTCGACCGTGTCCTCGCTGACGC 1498953 Query 350158 AAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCC 350217 || || ||| | ||| | | || | ||| | || |||||||| || ||||| || Sbjct 1498952 CAAGATCGACAAGAGCCAGGTCCACGAGATCGTTCTCGTCGGTGGTTCCACCCGTATCCC 1498893 Query 350218 AAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAA 350277 | || || | | | || | || || || || || || | || || || Sbjct 1498892 CCGTATCCAGAAGCTCATCACCGACTACTTCAACGGAAAGGAGCCCAACAAGTCCATCAA 1498833 Query 350278 TCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGG 350331 || ||||| |||||||| ||||||||||| || ||||| |||| | ||||| Sbjct 1498832 CCCCGATGAGGCTGTTGCCTATGGTGCTGCCGTCCAGGCTGCTATCCTGTCTGG 1498779 >seq6 Length=1479970 Score = 170 bits (188), Expect = 6e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| || ||||| || ||||| || ||||| || || ||||| | || || || ||| Sbjct 795406 AGAACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTCT 795465 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 ||||| || |||||||| ||||| ||||| ||||| |||||||| || || || |||||| Sbjct 795466 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCC 795525 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || | || ||||| ||||||| || |||| || ||||| ||||| | ||| Sbjct 795526 TGGATCTTCGACTTCACATTGTCAATCGTGTCCGATGACTCGACTTCCAGTGTGATAGTC 795585 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||||| || || || || ||||||||||| Sbjct 795586 TTTCCGGTGAGGGTCTTGACGAAAATCTGCAT 795617 Score = 149 bits (164), Expect = 2e-30 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || || || || |||||||| || || || || | Sbjct 795897 TTTGCATACCACCACGAAGGCGGAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGT 795956 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| ||||| || || ||||| || || || || || || | Sbjct 795957 AGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGT 796016 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||||||||| || || |||||||| || | || ||||| || || | |||||| | Sbjct 796017 CAGGAGGAATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAG 796076 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || ||||| || | ||||| ||||| || || || || ||||||||||| Sbjct 796077 ACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 796131 Score = 107 bits (118), Expect = 6e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || || || || || || || || || || || Sbjct 795615 CATACCACCACGCAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTC 795674 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| ||||| || || ||||||||||| || || || || || || Sbjct 795675 GGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGG 795734 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || |||||||| || | || || || || || | ||||| | ||| Sbjct 795735 AGGAATACCCTCCTTGTCCTGAATCTTCGACTTAACGTTGTCGATGGTGTCAGAAGATTC 795794 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || | ||||| ||||| || || || || Sbjct 795795 GACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 795833 >seq5 Length=1482039 Score = 95.1 bits (104), Expect = 4e-14 Identities = 213/320 (67%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 378127 CCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTACAGTCATATCA 378186 ||||| || ||||| ||| |||||||| | | || ||| | ||||| ||| Sbjct 1059377 CCATCTTCACCATACAGGAACTGAACAATATCACCTAGCGAGTTACGAACAGTTCCGTCA 1059318 Query 378187 TATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGA 378246 || | | | | | |||||| | || || | || || || |||||||||||| | | Sbjct 1059317 TAGCGAGCGCTCAGATCTTCAAGAGCCTTGACGAGACGACGTTGAATATAACCAGTCTCA 1059258 Query 378247 CTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAAT 378306 ||| || |||||||||||||| | ||| | | |||| |||| || |||||||| ||| Sbjct 1059257 GCAGTCTTCACTGCAGTATCAATAAGACCTTCTCTACCAGCCATAGCGTGGAAGAAGAAT 1059198 Query 378307 TCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAA 378366 || | || || || |||| || |||| | |||| ||||| | || | || || Sbjct 1059197 TCGGATGGGGTCAGACCACGAAGGTATGAGTTTTCAACGAATCCACGAGCTTCAGGAGAG 1059138 Query 378367 TCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTT 378426 | ||||| || || | || || ||||| || | | || || | ||||| || || Sbjct 1059137 TAATCATCCTTGGTGAAGTGCGGCAATGTGCGGTAGTTGAAACCGAAGGGAATACGCTTA 1059078 Query 378427 CCATCAACATTCTGTTGACC 378446 || || || |||| || || Sbjct 1059077 CCCTCCACCATCTGCTGTCC 1059058 >seq87 Length=157873 Score = 86.0 bits (94), Expect = 2e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || || || || || ||||| || || || || || || || Sbjct 70651 CCACCACGCAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 70592 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || || || || || || || || || ||||| || || ||||| || || || Sbjct 70591 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 70532 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || ||||| || || | || || || || || | || || | || || Sbjct 70531 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 70472 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || || || || || ||||||||||| Sbjct 70471 TCGAGGGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 70425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515239121026961