Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq127 242 4e-59 seq9 95.1 1e-14 seq2 95.1 1e-14 >seq127 Length=80722 Score = 242 bits (268), Expect = 4e-59 Identities = 391/553 (71%), Gaps = 8/553 (1%) Strand=Plus/Plus Query 53234 CGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACC 53293 |||||| ||||| ||| ||| ||| | | |||| |||||| || || | || || Sbjct 27136 CGTGTCATCGAGACCTACAACTACATGTCCAACAAGTTCTTTACTCATGCTTCTCCCACT 27195 Query 53294 CTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAG 53353 || ||||| || ||||| || ||||| | || |||||||| || | |||||| Sbjct 27196 CTATTCAATGCCGGTACCCCCCAGGCTCAGCTCTCATCATGCTTCCTTGTCGATATGAAG 27255 Query 53354 GATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGG 53413 |||||| || ||||| |||||||| || |||||| |||||| ||||| ||| | Sbjct 27256 GATGACAGCATTGACGGTATCTACGATACTCTCAAGACCTGTGCCATGATCTCAAAGATG 27315 Query 53414 TCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGG 53471 | || ||||||||| || || | || | || | ||||| | ||| | || | Sbjct 27316 GCAGGAGGTATCGGTCTCAAC-GTTC-ACCGCATTCGTGCTACAGGCTCGTACATTGCCG 27373 Query 53472 GGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCC 53531 | || |||||| || |||||||| | || ||||| || || ||||||||||| ||| Sbjct 27374 GTACCAACGGCACATCCAATGGAATCATCCCCATGCTGCGAGTGTTCAACAACACTGCCA 27433 Query 53532 GGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGT 53591 | || || | |||||||| |||||| || | || || ||||| |||||||| | Sbjct 27434 GATATGTTGATCAGGGTGGCAACAAGCGCCCCGGTGCCTTTGCTATCTATCTCGAGCCCT 27493 Query 53592 GGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGC 53651 ||||| | || | | |||||||| || || || |||||| || | |||||||| | Sbjct 27494 GGCACTCTGATGTCTTCGAGTTTCTGGACCTTCGAAAGAATCACGGAAAGGAAGAGATCC 27553 Query 53652 GCTGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710 | ||| || |||||||| ||||||||||| || || ||||||||| | || ||| Sbjct 27554 G-TGCACGAGACCTGTTCCTGGCTCTGTGGATCCCTGATCTCTTCATGAAGCGCGTTGAG 27612 Query 53711 AAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTA 53769 ||| ||||| | ||| || |||||||| ||||||||||| ||||| | | || ||| Sbjct 27613 AAGAACGAGAACTGGACTCTCATGTGCCCTAACGAGTGCCCTGGCCTGGCTGACTG-CTA 27671 Query 53770 CGGTGAGGAGTTT 53782 ||| ||||||||| Sbjct 27672 CGGCGAGGAGTTT 27684 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 || ||||| ||||| | ||| ||||| || || ||||| |||||| ||| || |||| Sbjct 28672 GCCGATCGAGGTGCTTTCATTGACCAATCTCAATCTCTCAACATCCATATGAAGGATCCC 28731 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 ||| ||| |||| | | | ||||||||| || ||||| |||||||||||| || Sbjct 28732 TCAATGGGCAAGATTACCAGTATGCACTTTGCTGGCTGGAAATTGGGACTCAAGACTGGC 28791 Query 55907 ATGTACTATCTGCGGAC 55923 ||||||||||| || || Sbjct 28792 ATGTACTATCTTCGTAC 28808 >seq9 Length=1081052 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 |||| || || || || | || |||||||| || ||||||||||||||||| || || Sbjct 1020316 ATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCAGACCACGCTTCTTCAACCAGAAAATA 1020375 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 | | ||| | |||||||||||||||||| ||||| || ||||| ||||| || || Sbjct 1020376 GAAGCGAAAGCACCACTGAAGAAGATGCCCTCGACGGCGGCGAAGGCAACAAGACGCTGA 1020435 Query 74904 GCGAA 74908 ||||| Sbjct 1020436 GCGAA 1020440 >seq2 Length=2392652 Score = 95.1 bits (104), Expect = 1e-14 Identities = 181/267 (68%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 ||| ||||||||||| | || || ||||| ||| ||||||||||| | ||||| | Sbjct 2318000 AGTAAAAATGTAACGGGGACTGGCGGCATCGGAGCCTCCAGCAAGACGGGAGCCGAAGTT 2318059 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| || |||||||| ||| | ||||| | || | || || ||||| | | || Sbjct 2318060 TCCGCTGGGCTCCAAACAGTTGACATTGTTAGATCCAATGAAATTCTGAGCAAGGCCAAC 2318119 Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483 ||| || ||||| | || ||||| ||||| || || || || | | ||| || Sbjct 2318120 AATTGTCTGCTGGAGCGAGACATCTCCATGATGATAAGCTGTGTGTTCGGAGATGTAACC 2318179 Query 117484 CGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCAC 117543 || | || |||||| |||| |||| ||| ||||| || |||| || || Sbjct 2318180 ACTGAGTTCGGCTACCTTCTTGTCCTTGGTCAAGTTACGCTTGAAACATCCATACATGAC 2318239 Query 117544 CTTGCGCTGACTTGGCTTCAGACCATC 117570 ||| ||||||| || ||||| ||||| Sbjct 2318240 CTTTCGCTGACCAGGTTTCAGTCCATC 2318266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547210616762600