Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq142 100 2e-16 >seq142 Length=63576 Score = 100 bits (110), Expect = 2e-16 Identities = 254/384 (66%), Gaps = 18/384 (5%) Strand=Plus/Minus Query 30082 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 30141 |||||| || || || ||||| | || ||| ||||||||||| || ||| ||| || Sbjct 35761 GTGGCAGGGGGGCAGCACCATGTTGGGCATGTCCTTGGGGTTCCACGCCGACAGGATCAT 35702 Query 30142 GCGCCTGTCTTCTGGGTT-GTTC----CT----GATGAGGTCCACGGCGTTTTGCAGCTG 30192 || | ||| | ||||| || | || |||||| || |||| ||||| Sbjct 35701 CCGGCGGTCGTAAGGGTTCGTGCGGAGCTTGTGGATGAGCTC---GGCG------AGCTG 35651 Query 30193 ATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCT 30252 || || ||| || | |||||| | | | ||| |||||| || || || |||| Sbjct 35650 GTCGACGCCCTGGCCGGTGTAGTCGGTCTTGGAGTCGACGTACTCGGCCCCAAAGTGCCG 35591 Query 30253 CCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTT 30312 ||||||||||||||| || || |||||||| ||| | || | || | ||| ||| Sbjct 35590 CCACTGGAACCCGTAGACGGGGCCCAGGTCGCCCACCTCGCGATGGGTCAGGCCGAGCTT 35531 Query 30313 GTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTC 30372 ||| | || || | || |||||| ||||||||||||| || |||| ||| |||| | Sbjct 35530 GTCGAGGAACTCGCGCGACCCGTTGCCGTCCCAGATCTTGACGCCCTGCTCGCTGAGCGC 35471 Query 30373 TTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAA 30432 || |||| || || |||||| || ||||| | || ||| || Sbjct 35470 GAGCGACGATGTGTTGCCCTGGATGAACCAGAGGAGCTCGAGGATGATGGCGCGGTGGAA 35411 Query 30433 GACCCTCTTGGTCGTGAGGAGGGG 30456 ||| | || |||||||||||||| Sbjct 35410 GACTCGTTTCGTCGTGAGGAGGGG 35387 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 29840 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAG 29899 || || || | ||| || | ||| ||||| | | |||| || |||| ||||||||| Sbjct 36066 GGGAACGGCCGGGGTTCTCGCTCCAGCTGCTCCCTGAGCGCGTCGACGTGGTCCAGGTAG 36007 Query 29900 ACGTGAGCGTCTCCCAGGTTGTGGACAA-ACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29958 ||||| ||||| |||| | |||| | ||| ||||| | | || |||||| || Sbjct 36006 ACGTGCGCGTCGCCCATGACGTGGGTGAGACTG-CCCGGCACCATGTCGCAGACGTGTGC 35948 Query 29959 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 30018 | ||||| ||| || || | ||||||||||||||| || || || || || ||||| || Sbjct 35947 GAGCATGTGCGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGGACGCCCAGGCCCATATC 35888 Query 30019 CCCCGACCTCTGGTAGAGCTGACA 30042 | |||| |||||| ||||| || Sbjct 35887 GCAGGACCGCTGGTACAGCTGGCA 35864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406306502848404