Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq6 179 9e-40 seq87 172 1e-37 seq4 143 6e-29 >seq6 Length=1479970 Score = 179 bits (198), Expect = 9e-40 Identities = 173/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| ||||| || || ||||| || |||||||| || || | ||||| Sbjct 795910 ACGAAGGCGGAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 795969 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || |||||||| || ||||| || ||||| |||||||||||||||| ||| Sbjct 795970 GCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGTCAGGAGGAATTCC 796029 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || || || |||||||| ||||| || ||||| || Sbjct 796030 CTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCAAG 796089 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| || ||||| ||||| || || | |||||| Sbjct 796090 AGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 796131 Score = 167 bits (184), Expect = 5e-36 Identities = 157/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||| || || |||||||| || || | ||||| | ||||| Sbjct 795634 AGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 795693 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| ||||| |||||||| ||||||| || ||||||||| Sbjct 795694 TCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCC 795753 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| |||||||||||||| ||| |||||||| ||||| ||| Sbjct 795754 TGAATCTTCGACTTAACGTTGTCGATGGTGTCAGAAGATTCGACCTCGAGGGTGATGGTC 795813 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 || || ||||| ||||| || Sbjct 795814 TTGCCGGTGAGGGTCTTGAC 795833 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| |||||||| || || ||||| || || | |||||| | || ||| Sbjct 795406 AGAACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTCT 795465 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || || ||||||||||| | || ||||| ||| Sbjct 795466 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCC 795525 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || || ||||| || || || || || ||||| ||| Sbjct 795526 TGGATCTTCGACTTCACATTGTCAATCGTGTCCGATGACTCGACTTCCAGTGTGATAGTC 795585 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| || || | |||||| Sbjct 795586 TTTCCGGTGAGGGTCTTGACGAAAATCTGCAT 795617 >seq87 Length=157873 Score = 172 bits (190), Expect = 1e-37 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || | ||||| | || || Sbjct 70636 AGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 70577 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 70576 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 70517 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| || || |||||||| ||||| ||| Sbjct 70516 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTC 70457 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || |||||||| ||||| || || | |||||| || Sbjct 70456 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 70422 >seq4 Length=1629322 Score = 143 bits (158), Expect = 6e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | ||||| || ||||||||||| |||||||| Sbjct 925070 TTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 925011 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || ||||||||||| |||| ||| ||||||||||| ||||| || || || || Sbjct 925010 AGACGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCA 924951 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| ||| || ||||| || ||||| ||||| ||||| || ||||| || || Sbjct 924950 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 924892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159140311763255