Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq142 104 2e-17 >seq142 Length=63576 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 27106 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 27165 || || || | ||| || | ||| ||||| | | |||| || ||||| ||||||||| Sbjct 36066 GGGAACGGCCGGGGTTCTCGCTCCAGCTGCTCCCTGAGCGCGTCGACGTGGTCCAGGTAG 36007 Query 27166 ACGTGAGCGTCTCCCAGGGTGTGGACAA-ACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 27224 ||||| ||||| |||| | |||| | ||| ||||| | | || |||||| || Sbjct 36006 ACGTGCGCGTCGCCCATGACGTGGGTGAGACTG-CCCGGCACCATGTCGCAGACGTGTGC 35948 Query 27225 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 27284 | ||||| ||| || || | ||||||||||||||| || || || || || ||||| || Sbjct 35947 GAGCATGTGCGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGGACGCCCAGGCCCATATC 35888 Query 27285 CCCCGACCTCTGGTAGAGCTGACA 27308 | |||| |||||| ||||| || Sbjct 35887 GCAGGACCGCTGGTACAGCTGGCA 35864 Score = 96.9 bits (106), Expect = 3e-15 Identities = 253/384 (66%), Gaps = 18/384 (5%) Strand=Plus/Minus Query 27348 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 27407 |||||| || || || ||||| | || ||| ||||||||||| || ||| ||| || Sbjct 35761 GTGGCAGGGGGGCAGCACCATGTTGGGCATGTCCTTGGGGTTCCACGCCGACAGGATCAT 35702 Query 27408 GCGCCTGTCTTCTGGGTT-GTTC----CT----GATGAGGTCCACGGCGTTTTGCAGCTG 27458 || | ||| | ||||| || | || |||||| || |||| ||||| Sbjct 35701 CCGGCGGTCGTAAGGGTTCGTGCGGAGCTTGTGGATGAGCTC---GGCG------AGCTG 35651 Query 27459 ATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCT 27518 || || ||| || | |||||| | | ||| |||||| || || || |||| Sbjct 35650 GTCGACGCCCTGGCCGGTGTAGTCGGTCTTGGAGTCGACGTACTCGGCCCCAAAGTGCCG 35591 Query 27519 CCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTT 27578 ||| ||||||||||| || || |||||||| ||| | || | || | ||| ||| Sbjct 35590 CCACTGGAACCCGTAGACGGGGCCCAGGTCGCCCACCTCGCGATGGGTCAGGCCGAGCTT 35531 Query 27579 GTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTC 27638 ||| | || || | || |||||| ||||||||||||| || |||| |||| |||| | Sbjct 35530 GTCGAGGAACTCGCGCGACCCGTTGCCGTCCCAGATCTTGACGCCCTGCTCGCTGAGCGC 35471 Query 27639 TTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAA 27698 || |||| || || |||||| || ||||| | || ||| || Sbjct 35470 GAGCGACGATGTGTTGCCCTGGATGAACCAGAGGAGCTCGAGGATGATGGCGCGGTGGAA 35411 Query 27699 GACCCTCTTGGTCGTGAGGAGGGG 27722 ||| | || |||||||||||||| Sbjct 35410 GACTCGTTTCGTCGTGAGGAGGGG 35387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369503655848597