Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq127 205 1e-47 >seq127 Length=80722 Score = 205 bits (226), Expect = 1e-47 Identities = 1051/1650 (64%), Gaps = 41/1650 (2%) Strand=Plus/Minus Query 76812 GTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTT 76871 ||||| ||||||||||| ||||| || || |||| |||| || || ||||| || Sbjct 28808 GTACGAAGATAGTACATGCCAGTCTTGAGTCCCAATTTCCAGCCAGCAAAGTGCATACTG 28749 Query 76872 GTCAGTTTGG--AATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGA 76929 || | ||| | | | ||||| ||||| || || | || ||| ||| || | Sbjct 28748 GTAATCTTGCCCATTGAG--GGATCCTTCATATGGATGTTGAGAGATTGAGATTGGTCAA 28691 Query 76930 TGAAAGCTCCTCTATCAGCCGCCATTTTTATAA-TGGTCTTTTGAGGAATTTCCCAAATA 76988 ||||||| |||| ||| || ||||| | | || | | | || ||| ||| ||||| | Sbjct 28690 TGAAAGCACCTCGATCGGCGGCCATCTGCACAACTTGACGTT-GAGAAATCTCCCAGACG 28632 Query 76989 GTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTG---TATTTTGAATGGAACCACCA 77045 || ||| | | |||| ||||| || | ||| | | ||||| || ||||| Sbjct 28631 GTCTTGTAGAGGGCCTTGAGGTCATCAGGGATGTTGGGGATGTTTTGGATCGAACCTTGT 28572 Query 77046 TCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTA 77105 || | |||||| ||||| || |||| |||||| | ||| | | || | Sbjct 28571 TCAGCAATAATTCGGTTCTTCATGGCATCGGACCACAAGCCCAACTCAACAAGATCTTTT 28512 Query 77106 AGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTA 77165 | ||| || || || | || || ||||||| || || | || | ||| || || Sbjct 28511 AAGAGCCAGGGGTTGACGACCTGGAACTCTCCAGCCAGAACACGTCGGGAGTAGATGTTG 28452 Query 77166 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGC 77225 || || || || | |||||||||| ||||| || |||| ||| || || ||| Sbjct 28451 GATGTGTAGGGCTCGAAGCATTCATTGTTGCCCAAGATCTGAGAGGTACTGGCTGTGGGC 28392 Query 77226 ATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATAT 77285 ||||| ||||| | | ||| || | || ||| || | |||| | ||| || Sbjct 28391 ATAGGAGCCACGAGCAGACTGTTGCGGATACCGTGCTCTTTGATCTGCTCTCGAAGCGTC 28332 Query 77286 TTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTA 77345 | ||| |||||||| || || || |||| ||| | ||| | || || ||||| | Sbjct 28331 TCCCACTCCCAAAGGTCAGAGGGGGTGACATTCCACATGTCGAACTGAAGGATTCCCTCT 28272 Query 77346 CTAGCATATGATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACA--- 77401 ||| ||||| || | || | || || |||| || ||| || ||||| || Sbjct 28271 GAAGCTGGGGATCCCTTGAAGGTCTGGTAGGGACCTTGCTCCTTC-GCGAGTTC-CATGG 28214 Query 77402 ACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGC 77461 |||| | | || | | || ||||| ||||| |||| |||||| || | | || Sbjct 28213 ACTCAGTA--AGGGCGGCATGGTAGATTGTCTCGAAGATCTGCTTATTCAGCTGACGAGC 28156 Query 77462 TTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCC 77521 ||| || || || | | | | || |||||||| | |||||||| || Sbjct 28155 CTCAGGCGACTCGAAAGGCATGCGCAGAGCCAAGAATGCATCTGCAAGACCCTGAACACC 28096 Query 77522 AATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATT 77581 || |||||| |||| ||| | | | ||| | || || ||| || || || || Sbjct 28095 AAGACCAATGGGTCGATGACGCATGTTGCTGTTGCGTGCCTCCTGAACGGGGTAGTAGTT 28036 Query 77582 AATGTCTATAATTTTATTGAGATTTCTAACAACTAC---TTTAACCACGTCCTTTAGTTT 77638 | || || || || || || | || | || | |||| ||| || || Sbjct 28035 GACATCGATGATACGGTTCAGGTTACGCACGATAACCCGTGTAACTTCGTGG---AGCTT 27979 Query 77639 AAGAAAATCAAATCTTCCATCTA--TAACAAACAT----GTTCAAAGCTATAGATGCTAG 77692 || | | | || || ||| ||| | | || ||| | || || || Sbjct 27978 CTTGAAGTTGTAGCAGCCCTCGTCGTAATCAACGTAGGCGGGCAGAGCCAGCGAAGCCAG 27919 Query 77693 ATTACAAACTGCTACCTCATTAGCGTTGGCA-TATTGTATTATCTCGGTACATAGATTAC 77751 || ||||| || ||||||| | | ||| |||| || ||||| || || ||||| Sbjct 27918 GTTGCAAACAGCAACCTCATCGG-GAGCGCAGTATTCAATAATCTCAGTGCAAAGATTGG 27860 Query 77752 TACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAA 77811 | |||||| ||||| || | ||||||||||| ||||| | ||||| |||| Sbjct 27859 AGCTGCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCTTGTAAA 27800 Query 77812 GAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAG 77871 | || || || | || || || | || | ||||| || || | ||| | | ||| | Sbjct 27799 GCATGAAGGGGTTACCAGTCTCGGTTTGGGCTTCGAGGATCGAGTACCACA-GCTTCTGG 27741 Query 77872 -CTTTTATCATA-GATTTGTATCGCCTCTCTCTTTCATATTGA--GTATATAGCCGTTCA 77927 | ||| | || | || | ||| ||||||| | ||||| ||| ||| Sbjct 27740 GCACGGATCGTCTGACGACCA-CGACCCTCCTTTTCATACTTCTCGTATAGGGCC--TCA 27684 Query 77928 AATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAG 77987 || || || || | ||| ||| |||||||| || || |||||||| | | |||| Sbjct 27683 AACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTAGGGCACATGAGAGTCCAG 27624 Query 77988 T-CACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAG 78046 | | | ||||| | ||| || ||||| ||||||||||| ||||| ||||| | || || Sbjct 27623 TTCTCGTTCTTC-TCAACGCGCTTCATGAAGAGATCAGGGATCCACAGAGCCAGGAACAG 27565 Query 78047 ATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAAT 78106 ||||| | | ||||| ||||| ||||||| ||| || |||||||| | | Sbjct 27564 GTCTCGTGCACGGATCTCTTCCTTTCCGTGATTCTTTCGAAGGTCCAGAAACTCGAAGAC 27505 Query 78107 ATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTG 78166 |||||| ||||| || || ||||| || || | | || || || || || || ||||| Sbjct 27504 ATCAGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCGGGGCGCTTGTTGCCACCCTG 27445 Query 78167 ATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGT 78226 ||| | ||||||||| ||||| || | |||| || ||| || || || || || ||||| Sbjct 27444 ATCAACATATCTGGCAGTGTTGTTGAACACTCGCAGCATGGGGATGATTCCATTGGATGT 27385 Query 78227 TCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTAT 78286 || || || || | ||| || || | || ||||| || | | || || Sbjct 27384 GCCGTTGGTACCGGCAATGTACGAGCCTGTAGCACGAATGCGGTGAACGTTGAGACCGAT 27325 Query 78287 TCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTAT 78346 |||||||||||||| || || | || || || | |||||||||||||| || || Sbjct 27324 ACCTCCTGCCATCTTTGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATACCGTCAAT 27265 Query 78347 ACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGC 78406 ||||||||| |||| | | ||| || || || | ||| || || || || Sbjct 27264 GCTGTCATCCTTCATATCGACAAGGAAGCATGATGAGAGCTGAGCCTGGGGGGTACCGGC 27205 Query 78407 ATTAAATAATGTCGGAGATGCATGCGTAAA 78436 ||| |||| || ||||| ||||| ||||| Sbjct 27204 ATTGAATAGAGTGGGAGAAGCATGAGTAAA 27175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694661966195680