Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq6 178 3e-39 seq87 172 1e-37 seq4 147 5e-30 seq9 105 1e-17 seq2 102 2e-16 seq41 87.8 4e-12 >seq6 Length=1479970 Score = 178 bits (196), Expect = 3e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || |||| || | ||| ||| || |||||||||||||| | Sbjct 795618 ACCACCACGCAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 795677 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || |||||||||| || |||||||| || Sbjct 795678 GAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGG 795737 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| || ||||| | || ||| | ||||| ||||| |||| |||||| Sbjct 795738 AATACCCTCCTTGTCCTGAATCTTCGACTTAACGTTGTCGATGGTGTCAGAAGATTCGAC 795797 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 ||||| ||||| ||||| || || | ||||| |||| Sbjct 795798 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGA 795835 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || ||||| || | || || || |||||||||||||| | Sbjct 795904 ACCACCACGAAGGCGGAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 795963 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || || |||| || ||||||||| || Sbjct 795964 GAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGTCAGGAGG 796023 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||| | || || | ||||| || || |||| ||||| Sbjct 796024 AATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGAC 796083 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || || | ||||| ||||| |||||||| Sbjct 796084 CTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 796131 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || ||||| || | ||| || || || ||||||||||||| | Sbjct 795391 CCGCCACGGAGACGGAGAACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAA 795450 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| || || || || || || || ||||| | ||| || |||||| || Sbjct 795451 AGGGTACGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGG 795510 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| || |||||||| | || || | || || |||||||| | |||||| Sbjct 795511 ATACCCTCCTTATCCTGGATCTTCGACTTCACATTGTCAATCGTGTCCGATGACTCGACT 795570 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 795571 TCCAGTGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAAATCTGCAT 795617 >seq87 Length=157873 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||||||| || || || || | ||| || || |||||||||||||| | Sbjct 70651 CCACCACGCAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 70592 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || ||||| ||||||| || || ||||| || Sbjct 70591 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 70532 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || || Sbjct 70531 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 70472 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| ||||| ||||| ||||| | ||||| ||||| |||||||| || Sbjct 70471 TCGAGGGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 70422 >seq4 Length=1629322 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || |||||||||||||| || || || ||||| |||||| Sbjct 925070 TTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 925011 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | ||| ||||||||| ||||| ||||||||||| || ||||| | || || | || Sbjct 925010 AGACGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCA 924951 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| || | ||||| || || ||||| ||||| ||||||| ||||| ||||| Sbjct 924950 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 924892 >seq9 Length=1081052 Score = 105 bits (116), Expect = 1e-17 Identities = 172/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222 ||| |||| || | || | | ||| ||||||||| | || || |||||||| Sbjct 1020227 ATCATCACTGACGCCGTCACCATTGAGAAGGAGTTCTTGACTGAGGCCCTTCCTTGCGCC 1020168 Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 | | |||||||| || | || ||| ||| || ||||| || || || || ||| || Sbjct 1020167 ATGCTGGGCATGAACGCCAACCTGATGAAGCAGTACATCGAGTTTGTTGCCGACCGTCTT 1020108 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 | || || || || |||| || ||||| || || | |||||||||| || |||||| Sbjct 1020107 CTGGTCGCTCTCGGCAACGACAAGGTGTACAAGTCGACCAACCCCTTCGACTTCATGGAG 1020048 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGG 230402 ||| || || || ||||| ||||||||||| ||||| ||| | || || || | | Sbjct 1020047 AACATCTCCCTTGGAGGCAAAACCAACTTCTTCGAGAAGCGCGTCGGTGACTACCAGAAG 1019988 Query 230403 CCCGGTGT 230410 ||||||| Sbjct 1019987 GCCGGTGT 1019980 >seq2 Length=2392652 Score = 102 bits (112), Expect = 2e-16 Identities = 202/290 (70%), Gaps = 12/290 (4%) Strand=Plus/Plus Query 274431 ACGATGGGCGTGATAAATTTCTTCAGGAAACCTGGAATTTCTAGCAGACTG-GGGAAACA 274489 |||||||| |||||||| | || ||||| | || || | || || || |||||| Sbjct 2318676 ACGATGGGTGTGATAAACTCCTGAAGGAAGTCAGGTATCTTAAGAAG--TGAGGGAAATT 2318733 Query 274490 --ACTATGGAAAAAGTTCATGACAAGACC--TGATATGTGAGTTCCGTCAACGTCGGCAT 274545 ||| |||| |||||| || | |||||| ||||||| | |||| || || || Sbjct 2318734 GCACT-TGGAGAAAGTTAATTAGAAGACCCTTGATATG--ACTTCCATCGTGATCCTGAT 2318790 Query 274546 CTGTCATGATCATAACATGTCCATACCGAAGCGAGGAAGTATCTTTATACAACT-TCCCT 274604 | ||||||||||| | || ||||| ||||||| ||||| |||| | | | | Sbjct 2318791 CAGTCATGATCATCAAGTGACCATATCGAAGCGTCTTGGTATCCGTATAGACTTGTTTAT 2318850 Query 274605 GTTTGAAGCCCAAGAATTTGCTTGAGAGCGGTGATTTCTTCGTTCTTTGTGATACTCGCC 274664 | || | |||| ||||| | || | | |||||||| |||||| ||||| | Sbjct 2318851 GCTTCAGTCCCAGGAATT-GTTTAATATTCTGGATTTCTTGGTTCTTGGTGATCTGATCA 2318909 Query 274665 ACAGAAGCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCC 274714 || |||||||| || ||||| |||| ||| || ||||||||||| ||||| Sbjct 2318910 ACGGAAGCATCGCGAACGTTGAGCAGCTTTCCACGGAGAGGGAACACGCC 2318959 >seq41 Length=362133 Score = 87.8 bits (96), Expect = 4e-12 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 315667 ACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAGACTCTCGCGGTCCACA 315726 || ||||| |||| ||||| || |||| | || ||||||||| || ||||||| | Sbjct 255370 ACACCACCCTCGAACTTCTTCAGGGCCTTGGACAGGGCACCGAGGGAGTCACGGTCCAGA 255311 Query 315727 AAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCATAGAGCG-GCGCCGAT 315785 ||||||| ||||| ||||| ||||| | ||| ||| | ||||| |||| ||| | | Sbjct 255310 TAGTTGGTAGGCTCGTCAAGGACGATCAAGTGAGGTCGCTGCCAC-GAGCAAGCGGCAAG 255252 Query 315786 AACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAGAATGAG 315835 || ||| | || ||||||||||| ||||| ||||| || |||| Sbjct 255251 GACAGTCTTGACACGCTGGCCACCAGACAGACCACGCATGCGGGAGTGAG 255202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046728645270698