Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq87 156 1e-32 seq6 138 3e-27 seq4 129 1e-24 >seq87 Length=157873 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || || ||||||||||||||||| || ||| Sbjct 70428 CAGATTTTCGTCAAGACCCTCACGGGGAAGACTATCACCCTCGAGGTGGAGTCTTCCGAC 70487 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 70488 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 70547 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || |||| || ||| || Sbjct 70548 CGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATC 70607 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 70608 CAGAAGGAGTCCACCCTCCACCTCGT 70633 >seq6 Length=1479970 Score = 138 bits (152), Expect = 3e-27 Identities = 150/198 (76%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || ||||| || || || |||||||||||||| ||| || |||||||||| Sbjct 795835 TCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAATCTTCTGACACCATCG 795776 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | ||||| || |||||||||||||| || || || ||||| ||||| || || || | Sbjct 795775 ACAACGTTAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAACAGCGCCTGA 795716 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||| || || || ||||| || ||||| | || || |||| || ||| |||| || | Sbjct 795715 TCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAGG 795656 Query 178111 AATCAACACTGCATCTTG 178128 |||| || || || |||| Sbjct 795655 AATCCACCCTCCA-CTTG 795639 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || || ||||| || ||||| || || || Sbjct 796128 CAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCTGAT 796069 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| |||||||||||||| || ||||| ||||| ||||| || Sbjct 796068 ACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCAACAG 796009 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||||| || ||||| | || || |||| || ||| || Sbjct 796008 CGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATC 795949 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 795948 CAGAAGGAGTCTACCCTCCACCTGGT 795923 >seq4 Length=1629322 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 |||||||| || || || || || || |||||||| ||||| || ||| |||||||| Sbjct 924892 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATT 924951 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| |||||||||||||| || ||||| || || ||||| || || || Sbjct 924952 GACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCTGACCAACAGCGTCTG 925011 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || |||||||| ||||| | || || | || || ||| |||| || Sbjct 925012 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCAGACTACAACATCCAGAA 925070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203719062251678