Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq87 179 3e-40 seq6 134 1e-26 seq4 132 4e-26 seq15 87.8 2e-12 >seq87 Length=157873 Score = 179 bits (198), Expect = 3e-40 Identities = 181/233 (78%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || || || | ||| || || || ||| ||||||||| ||||| ||||||| Sbjct 70653 CGCCACCACGCAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 70594 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 |||||||||| |||| |||||||||||||||||||| ||||||||||| ||||| | || Sbjct 70593 AGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGG 70534 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 | | || |||||||||| ||| || ||| ||| | | | |||||| |||||| Sbjct 70533 GGATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCGGAAGACTCC 70475 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| | || || || || ||||| || ||||| |||||||||||||| || Sbjct 70474 ACCTCGAGGGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 70422 >seq6 Length=1479970 Score = 134 bits (148), Expect = 1e-26 Identities = 171/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || || ||||||||| ||||| ||||||||| Sbjct 795905 CCACCACGAAGGCGGAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 795964 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||| || ||||| ||||||||||||||||| | ||| Sbjct 795965 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGTCAGGAGGA 796024 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | | |||||||||| ||| | || | ||| || | || | || || ||||| Sbjct 796025 ATTCCCTCCTTGTCC-TGAATCTTCGACTTGACATTGTCG--ATGGTATCAGAAGACTCG 796081 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| | || || || || || || || ||||| ||||||||||||||| Sbjct 796082 ACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATG 796132 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | ||||| || || ||| ||||||||||||||| ||||| || Sbjct 795390 GCCGCCACGGAGACGGAGAACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGA 795449 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || |||| || |||||||| || ||||| || || ||||| ||||| | || Sbjct 795450 AAGGGTACGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGG 795509 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||| ||| ||| || |||| || | | | ||||| ||||| | Sbjct 795510 GATACCCTCCTTATCCTGGATCTTCGACTTC-ACATTGTCAATCGTGTCCGATGACTCGA 795568 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || || || || || || || ||||| |||||||||||||| Sbjct 795569 CTTCCAGTGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAAATCTGCAT 795617 Score = 125 bits (138), Expect = 7e-24 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| |||||||| ||||| ||||||||| Sbjct 795619 CCACCACGCAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 795678 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| || || ||||||||||||||||| | ||| Sbjct 795679 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGA 795738 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || | | |||| | | | ||||| || || || Sbjct 795739 ATACCCTCCTTGTCC-TGAATCTTCGACTTAACGTTGTCGATGGTGTCAGAAGATTCGAC 795797 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 ||| | || || || || || || || ||||| |||| Sbjct 795798 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGA 795835 >seq4 Length=1629322 Score = 132 bits (146), Expect = 4e-26 Identities = 140/182 (77%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| ||||||||||| | || |||||||||||||||||||| | Sbjct 925072 CCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 925013 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||| ||||||||||| | ||||| | |||||||||| ||| | || | | || | Sbjct 925012 TCAGACGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCC-TGAATCTTGGACTTGACATTG 924954 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | |||||| ||||| ||||| | || || || || |||||||| ||||| ||| Sbjct 924953 TCAATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 924894 Query 41852 AA 41853 || Sbjct 924893 AA 924892 >seq15 Length=790330 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859 || ||||| || || ||||||||||| |||| || |||||| ||| ||||| || Sbjct 480454 CGCATCGCCCCCCGATCCGGCCTCGCGTCCAAGAACTTCATCGACACGGGTGCCGGCGTG 480513 Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912 || ||||||||||||||||| | |||| || | ||||||||||||| ||| Sbjct 480514 ATTGACGCCGACTACCGCGGCGAGGTCAAGGTCCTCCTCTTCAACCACGCCGA 480566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462299452084400