Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq9 132 1e-25
>seq9
Length=4851470
Score = 132 bits (146), Expect = 1e-25
Identities = 323/473 (68%), Gaps = 16/473 (3%)
Strand=Plus/Plus
Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCG-GGAG 230228
|| || ||| ||||||| || |||| | |||||| ||||| || | ||| | || |
Sbjct 3450522 TCCTTCGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTAT-CT-TCTTCAGCGGTG 3450579
Query 230229 TTTCTGCG-CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 230287
|| ||| ||||||||||||| ||| || | ||||| || || | || |
Sbjct 3450580 CTTTTGCCTCCATCTTTTGGCTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCA 3450639
Query 230288 ACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCA 230346
||||| ||||| || ||||||||||| || || | | || | | || |||| ||
Sbjct 3450640 ACGAGCTCATCTCCCGTGACGAGGGTCTGCA-CACCGACTTTGCCTGCCTCTTGTACTCT 3450698
Query 230347 AAGCTCCAGAACAAGCTACCATTCGAGACGGTCA---AACAAATCATTACAGAAGCAGTT 230403
| ||| || || | ||| | || ||||| | | ||||| || || ||
Sbjct 3450699 CACCTCAAGCACCGCC--CCAA-CAAGCAGGTCATTGAGGACATCATCGTTGATGCCGTC 3450755
Query 230404 GAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGC 230462
| | || |||||||| | ||| ||| | || || ||| ||| | ||||||||| |
Sbjct 3450756 AAGATTGAGCAGGAGTTCCTCACTGAGGCTCTGCCCTG-CGCTCTTCTCGGCATGAACTC 3450814
Query 230463 TGAACTT-ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTT 230521
||||| ||| |||||||| || ||||| ||||||||| | | || || |||||
Sbjct 3450815 C-AACTTGATGAAGCAGTACATTGAGTTCGTTGCCGACCGCCTCCTGGTCGCTCTTGGCA 3450873
Query 230522 ACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAG 230581
|||| || || ||||| || |||||||| | || |||||| ||| || ||| |
Sbjct 3450874 ACGACAAGGTCTACAAGTCCTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCG 3450933
Query 230582 GGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTG 230634
| |||||||||||||| || ||||||||| |||||| |||| | ||||||||
Sbjct 3450934 GCAAGACCAACTTCTTTGAGAAGCGTGTCGCTGACTACCAGAAGGCTGGTGTG 3450986
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057823539185420
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |