Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq9 132 1e-25 >seq9 Length=4851470 Score = 132 bits (146), Expect = 1e-25 Identities = 323/473 (68%), Gaps = 16/473 (3%) Strand=Plus/Plus Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCG-GGAG 230228 || || ||| ||||||| || |||| | |||||| ||||| || | ||| | || | Sbjct 3450522 TCCTTCGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTAT-CT-TCTTCAGCGGTG 3450579 Query 230229 TTTCTGCG-CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 230287 || ||| ||||||||||||| ||| || | ||||| || || | || | Sbjct 3450580 CTTTTGCCTCCATCTTTTGGCTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCA 3450639 Query 230288 ACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCA 230346 ||||| ||||| || ||||||||||| || || | | || | | || |||| || Sbjct 3450640 ACGAGCTCATCTCCCGTGACGAGGGTCTGCA-CACCGACTTTGCCTGCCTCTTGTACTCT 3450698 Query 230347 AAGCTCCAGAACAAGCTACCATTCGAGACGGTCA---AACAAATCATTACAGAAGCAGTT 230403 | ||| || || | ||| | || ||||| | | ||||| || || || Sbjct 3450699 CACCTCAAGCACCGCC--CCAA-CAAGCAGGTCATTGAGGACATCATCGTTGATGCCGTC 3450755 Query 230404 GAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGC 230462 | | || |||||||| | ||| ||| | || || ||| ||| | ||||||||| | Sbjct 3450756 AAGATTGAGCAGGAGTTCCTCACTGAGGCTCTGCCCTG-CGCTCTTCTCGGCATGAACTC 3450814 Query 230463 TGAACTT-ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTT 230521 ||||| ||| |||||||| || ||||| ||||||||| | | || || ||||| Sbjct 3450815 C-AACTTGATGAAGCAGTACATTGAGTTCGTTGCCGACCGCCTCCTGGTCGCTCTTGGCA 3450873 Query 230522 ACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAG 230581 |||| || || ||||| || |||||||| | || |||||| ||| || ||| | Sbjct 3450874 ACGACAAGGTCTACAAGTCCTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCG 3450933 Query 230582 GGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTG 230634 | |||||||||||||| || ||||||||| |||||| |||| | |||||||| Sbjct 3450934 GCAAGACCAACTTCTTTGAGAAGCGTGTCGCTGACTACCAGAAGGCTGGTGTG 3450986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823539185420