Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq9 87.8 2e-12
>seq9
Length=4851470
Score = 87.8 bits (96), Expect = 2e-12
Identities = 193/287 (67%), Gaps = 3/287 (1%)
Strand=Plus/Minus
Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293
|| || || |||||||| ||| ||| | || ||||| ||||||||||| |||||
Sbjct 3450362 ATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGG 3450303
Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353
|| ||||| ||||| || || || | | || || || || |||| || || | ||
Sbjct 3450302 AAGCCGTAGAAGCAGCGAGCCTCAGGGACCTGGACCTCGCCGGAGAAGCGCTCGACCAGG 3450243
Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413
|| || || ||||| ||||| |||||||| || || | || || ||||| ||
Sbjct 3450242 TTCTCATTGACGATACCGTCCGATGCGGCGAAGAAGGCAAGAATGTGAGAGATGAAGTAC 3450183
Query 17414 TTTTCGTC--CGGTG-TAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470
|| || || || || | | |||||| | | ||| ||||| | ||| | ||
Sbjct 3450182 TTCTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCAATCTCC 3450123
Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517
|||| |||||| || |||| | ||||| || ||||| | ||| ||
Sbjct 3450122 TCGGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCCAGAT 3450076
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517545380043120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |