Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6 143 3e-29 seq9 95.1 1e-14 >seq6 Length=6290098 Score = 143 bits (158), Expect = 3e-29 Identities = 563/875 (64%), Gaps = 24/875 (3%) Strand=Plus/Plus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 ||||| || |||| || ||||| | | ||| || ||| | || |||| ||||| Sbjct 2839342 CCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATG 2839401 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 || ||||| || ||||| ||||| | || || || | || | ||||| || || Sbjct 2839402 AACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCA 2839461 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 ||||| | || | |||| | | | || | |||||||| || | ||| || Sbjct 2839462 TGGTTCTTGCGCAAGTCCATGAACTCGAAGACGTCGGCGTGCCACGGCTCAAGGTAAATA 2839521 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | | ||||| || ||||| || ||||| || | ||| | ||| ||||| ||| | Sbjct 2839522 GCGAAAGCGCCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTAAAG 2839581 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | | ||| ||||| | ||| || || | || ||||| |||| |||||| ||| Sbjct 2839582 ACACGAAGCATGGGAATGACACCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCA 2839641 Query 54281 CTGGCACGAATATTACTAATTGAT-AGACCTATCCCCCCTGCCATTTTAGAGATTAATGC 54339 ||||||||||| | | | | ||||| || || || ||||| || ||||| | || Sbjct 2839642 GTGGCACGAATA-CGGTGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGC 2839700 Query 54340 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 54399 ||| || | || || ||||| ||||| ||| || ||| |||||| | || || Sbjct 2839701 GCAGGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAA 2839760 Query 54400 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 54459 || ||||| ||| || || || || || || | || || || || || || Sbjct 2839761 GCATGAAGACAGCTGGCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGT 2839820 Query 54460 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCGAT----AGCT-GAGTCTAT-ATCCCA 54513 || | || || | || ||||| |||||||| ||| || ||| | |||| Sbjct 2839821 GAAGAACTTGCTGGACATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCA 2839880 Query 54514 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 54573 |||| || ||||| |||||||| | ||||||||| ||||| || | |||||| Sbjct 2839881 --GATG----CCGACTGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCC 2839934 Query 54574 GTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 54633 | | || |||| ||| ||| | |||| || || || || || || | ||| || Sbjct 2839935 ATCAAGCTTGAGCAGGTATGATCTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAA 2839994 Query 54634 GTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCAT 54693 ||| || ||||| | ||| | || | ||| | ||||| | | | | || |||| Sbjct 2839995 GTCGCGGTCGTAGACAATGGCAGAATCGAGCTCTTCCTTGTGTCTCATGACGGCATCGTA 2840054 Query 54694 GGTAATACTT-GAAATAATCGGAGA----ATGTTTCCCATTTTTAGGATTGACATAGTTA 54748 || | ||| | ||| || ||||| |||| ||| | || |||||||||| Sbjct 2840055 TGT-CTCCTTGGCAATCATGGGAGACGCCCTGTT----GTTTCTGGGGTTGACATAGTGG 2840109 Query 54749 AATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACG 54808 | | || | || || | || | || ||||| | ||||| || || || ||| Sbjct 2840110 TAGAGGTCGCTAATGACCGAAGACCATTGCTTCTTTGTCTGCTTGTGGAGGTTGGAGACG 2840169 Query 54809 GCTATTCTAGCGGCTAGAATGGCATAATCCGGATG 54843 ||||| | || || || |||||||| || || || Sbjct 2840170 GCTATGCGGGCAGCGAGGATGGCATAGTCGGGGTG 2840204 >seq9 Length=4851470 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || ||| ||| ||||||||||| | || | |||||||| || || || Sbjct 3450685 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGA 3450626 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 |||||||| ||||||||||| || |||||||| ||||| ||||| | || ||||| Sbjct 3450625 CCGGGCATGAGGCCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAG 3450566 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAA 24279 || || || || || |||||||||| Sbjct 3450565 ATACCCTCAACAGCGGCAAAGGCAA 3450541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721347668320