Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq6 143 3e-29
seq9 95.1 1e-14
>seq6
Length=6290098
Score = 143 bits (158), Expect = 3e-29
Identities = 563/875 (64%), Gaps = 24/875 (3%)
Strand=Plus/Plus
Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040
||||| || |||| || ||||| | | ||| || ||| | || |||| |||||
Sbjct 2839342 CCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATG 2839401
Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100
|| ||||| || ||||| ||||| | || || || | || | ||||| || ||
Sbjct 2839402 AACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCA 2839461
Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160
||||| | || | |||| | | | || | |||||||| || | ||| ||
Sbjct 2839462 TGGTTCTTGCGCAAGTCCATGAACTCGAAGACGTCGGCGTGCCACGGCTCAAGGTAAATA 2839521
Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220
| | | | ||||| || ||||| || ||||| || | ||| | ||| ||||| ||| |
Sbjct 2839522 GCGAAAGCGCCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTAAAG 2839581
Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280
|| | | ||| ||||| | ||| || || | || ||||| |||| |||||| |||
Sbjct 2839582 ACACGAAGCATGGGAATGACACCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCA 2839641
Query 54281 CTGGCACGAATATTACTAATTGAT-AGACCTATCCCCCCTGCCATTTTAGAGATTAATGC 54339
||||||||||| | | | | ||||| || || || ||||| || ||||| | ||
Sbjct 2839642 GTGGCACGAATA-CGGTGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGC 2839700
Query 54340 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 54399
||| || | || || ||||| ||||| ||| || ||| |||||| | || ||
Sbjct 2839701 GCAGGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAA 2839760
Query 54400 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 54459
|| ||||| ||| || || || || || || | || || || || || ||
Sbjct 2839761 GCATGAAGACAGCTGGCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGT 2839820
Query 54460 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCGAT----AGCT-GAGTCTAT-ATCCCA 54513
|| | || || | || ||||| |||||||| ||| || ||| | ||||
Sbjct 2839821 GAAGAACTTGCTGGACATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCA 2839880
Query 54514 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 54573
|||| || ||||| |||||||| | ||||||||| ||||| || | ||||||
Sbjct 2839881 --GATG----CCGACTGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCC 2839934
Query 54574 GTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 54633
| | || |||| ||| ||| | |||| || || || || || || | ||| ||
Sbjct 2839935 ATCAAGCTTGAGCAGGTATGATCTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAA 2839994
Query 54634 GTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCAT 54693
||| || ||||| | ||| | || | ||| | ||||| | | | | || ||||
Sbjct 2839995 GTCGCGGTCGTAGACAATGGCAGAATCGAGCTCTTCCTTGTGTCTCATGACGGCATCGTA 2840054
Query 54694 GGTAATACTT-GAAATAATCGGAGA----ATGTTTCCCATTTTTAGGATTGACATAGTTA 54748
|| | ||| | ||| || ||||| |||| ||| | || ||||||||||
Sbjct 2840055 TGT-CTCCTTGGCAATCATGGGAGACGCCCTGTT----GTTTCTGGGGTTGACATAGTGG 2840109
Query 54749 AATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACG 54808
| | || | || || | || | || ||||| | ||||| || || || |||
Sbjct 2840110 TAGAGGTCGCTAATGACCGAAGACCATTGCTTCTTTGTCTGCTTGTGGAGGTTGGAGACG 2840169
Query 54809 GCTATTCTAGCGGCTAGAATGGCATAATCCGGATG 54843
||||| | || || || |||||||| || || ||
Sbjct 2840170 GCTATGCGGGCAGCGAGGATGGCATAGTCGGGGTG 2840204
>seq9
Length=4851470
Score = 95.1 bits (104), Expect = 1e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194
|| || || ||| ||| ||||||||||| | || | |||||||| || || ||
Sbjct 3450685 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGA 3450626
Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254
|||||||| ||||||||||| || |||||||| ||||| ||||| | || |||||
Sbjct 3450625 CCGGGCATGAGGCCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAG 3450566
Query 24255 ATTCCTTCTACTGCCGCAAAGGCAA 24279
|| || || || || ||||||||||
Sbjct 3450565 ATACCCTCAACAGCGGCAAAGGCAA 3450541
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593721347668320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |