Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq10 95.1 1e-14 seq6 95.1 1e-14 >seq10 Length=4416304 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | ||||||||||| || ||||| ||||| | Sbjct 3556406 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3556465 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| || || || | || || | ||||||||| ||| Sbjct 3556466 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 3556525 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | ||| || || | |||| Sbjct 3556526 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 3556585 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || |||||||| || | || ||||| || || ||||| Sbjct 3556586 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 3556632 >seq6 Length=6290098 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | ||||||||||| |||||||| ||||| | |||||| || | ||| Sbjct 607366 AGAACCAAATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCC 607307 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || || ||||| ||| | || | | ||||||||| ||| | ||| ||||| || Sbjct 607306 TCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 607247 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| || || | | ||| |||||| | ||| || | ||| |||||| Sbjct 607246 TGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTC 607187 Query 21144 TTGCCGGTTAACGTTTTGAC 21163 ||||| || | ||| ||||| Sbjct 607186 TTGCCAGTGAGCGTCTTGAC 607167 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||| |||||||| || ||||| ||||| | Sbjct 607095 CCACCACGAAGGCGGAGAACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 607036 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| ||||| || |||| || | |||||| || ||| Sbjct 607035 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGA 606976 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | | | ||||| || ||| Sbjct 606975 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTATCAATGGTATCGGAGGACTCGACC 606916 Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151 || | || |||||||||||||| Sbjct 606915 TCGAGAGTGATGGTCTTGCCGGT 606893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422259025026344