Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq9 196 5e-45 seq10 143 3e-29 seq14 123 3e-23 seq6 123 3e-23 >seq9 Length=4851470 Score = 196 bits (216), Expect = 5e-45 Identities = 321/456 (70%), Gaps = 5/456 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGCCTTCGGCGAGCGC 117040 ||||||| || ||||| ||| |||||| || |||| || |||||| | |||| Sbjct 3450478 AGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGAT-GAGAACTCCTCCTTCGCCCAGCGT 3450536 Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 ||||| ||||| || || || ||||| ||||||| || ||| ||| |||| ||| Sbjct 3450537 CTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTT 3450596 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||||||||||| || |||||||||||||| ||||| ||| |||||||||||||||| | Sbjct 3450597 TGGCTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCCCGT 3450656 Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220 |||||||||||||| |||||||||||| | ||| | || | ||| || || Sbjct 3450657 GACGAGGGTCTGCACACCGACTTTGCCTGCCTCTTGTACTCTCACCTCAAGCACCGCCCC 3450716 Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280 | | | | | | ||| ||| || || || ||| || |||||| |||||| Sbjct 3450717 AACAAGCAGGTCATTGAGGACATCATCGTTGATGCCGTCAAGATTGAGCAGGAGTTCCTC 3450776 Query 117281 ACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACAT 117339 || || || ||||| |||| ||| || || | || | | | |||| ||| ||||| Sbjct 3450777 ACTGAGGCTCTGCC-CTGCGCTCTTCTCGGCATGAACTCCAACTTGATGAAGCAGTACAT 3450835 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 |||||||| |||||| | || ||| ||| || | | || |||| |||||| | | Sbjct 3450836 TGAGTTCGTTGCCGACCGCCTCCTGGTCGCTCTTGGCAACGACAAGGTCTACAAGTCCTC 3450895 Query 117400 CAACCCGCTGGACTTTATGAACCTCATCT-CCTTGG 117434 |||||| | ||||| ||| | ||||| |||||| Sbjct 3450896 CAACCCCTTCGACTTCATGGAGAACATCTCCCTTGG 3450931 Score = 178 bits (196), Expect = 1e-39 Identities = 213/286 (74%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| ||||||| | || || Sbjct 3450076 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 3450135 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCTTGA---ACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | | || |||| | ||| | |||||| Sbjct 3450136 TCCAAGGATCTCCA-CGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTC 3450194 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || ||||| |||||||| ||||| |||||||| ||||| ||||||||||| Sbjct 3450195 TCACATTCTTGCCTTCTTCGCCGCATCGGACGGTATCGTCAATGAGAACCTGGTCGAGCG 3450254 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | ||||| ||||| | ||||| || |||||||||||||| |||||| || Sbjct 3450255 CTTCTCCGGCGAGGTCCAGGTCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGAT 3450314 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||| | ||||| || | || || |||||||||||| ||| Sbjct 3450315 GGAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGACACCTAC 3450360 >seq10 Length=4416304 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| || |||||| | || || || | || Sbjct 3556632 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 3556573 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| |||||||| ||| | |||||| Sbjct 3556572 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 3556513 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| || || ||||| || |||| ||||||||| |||||||||| Sbjct 3556512 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 3556453 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| || || || || ||||| || | || || Sbjct 3556452 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 3556406 >seq14 Length=3529981 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||| ||| | || ||||| || |||||| | Sbjct 714048 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGATC 714107 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||||||| | |||||||| || || Sbjct 714108 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTG 714167 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || || | ||||||||| ||||||||||||||||||| Sbjct 714168 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 714227 Query 40879 G 40879 | Sbjct 714228 G 714228 >seq6 Length=6290098 Score = 123 bits (136), Expect = 3e-23 Identities = 138/182 (76%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| |||||||| |||| ||||| || |||| | | | | |||| | ||| Sbjct 606891 TCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGATACCATTGATAACG-TGAAG 606949 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| |||||||| ||| | || ||||| || ||||| | ||| ||| Sbjct 606950 TCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGC 607009 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || |||| ||||||||| |||||||||||||||||||||| | || || Sbjct 607010 AAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACTCTC 607069 Query 40891 CA 40892 || Sbjct 607070 CA 607071 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || |||||||| ||||| ||||||||| | || ||||| | | || | | | Sbjct 607165 TCGTCAAGACGCTCACTGGCAAGACCATCACCCTTGAGGTCGAGTCTTCTGATACCATCG 607224 Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 | | ||||| || |||| || || |||||||||||| | |||||||| || | | Sbjct 607225 ACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGCGTTTGA 607284 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 ||| || ||||| || || || || | |||||||| |||||||||||| ||||||| Sbjct 607285 TCTTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGG 607344 Query 40880 AGGCCACGCTGCAT 40893 || |||| || ||| Sbjct 607345 AGTCCACACTCCAT 607358 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || || || || || || | || ||||| | | Sbjct 607611 ATGCAGATCTTCGTCAAGACGCTGACTGGAAAGACGATTACATTGGAAGTCGAGTCATCT 607670 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | | ||| || || | ||||| ||||| || ||| | ||||| Sbjct 607671 GACACGATTGATAATG-TGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCA 607729 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || |||||||| || | ||||| || | ||| ||||| Sbjct 607730 GCAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAAGATGGTCGCACTCTGAGCGATTACAA 607789 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || ||||| || Sbjct 607790 CATCCAGAAGGAATCAACCCTCCATCTGGT 607819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218981031840