Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq6 120 7e-22
seq13 102 2e-16
seq8 93.3 9e-14
>seq6
Length=6290098
Score = 120 bits (132), Expect = 7e-22
Identities = 407/625 (65%), Gaps = 17/625 (3%)
Strand=Plus/Minus
Query 248791 GCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAA 248850
|| |||| ||||| | || || | ||| | | ||| | ||||| || ||||||| |
Sbjct 2840015 GCCATTGTCTACGACCGCGACTTCAACTACCAATACTTCGGCTTCAAGACCCTGGAGAGA 2839956
Query 248851 TCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGA 248910
|| || || ||||| ||||||||||||| | || || ||||||||| | |||||
Sbjct 2839955 TCATACCTGCTCAAGCTTGATGGCAAGATTGCCGAGAGACCCCAGCACATGATCATGCGT 2839896
Query 248911 GTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATG 248970
|| || ||||| || ||| || | ||| |||| ||||||| |||| | |||
Sbjct 2839895 GTTGCAGTCGGCATCTGGGGTGATAACGTCGAGCGCGTCATCGAGACCTACAACCTCATG 2839836
Query 248971 ---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAAC 249027
|| | || | || |||||| | || || ||||||||||| |||||| | |
Sbjct 2839835 TCCAGCAAGTTCT---TCACCCATGCCTCCCCCACACTCTTCAACGCTGGTACC--CCTC 2839781
Query 249028 AAT--CAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTT 249085
| | |||||| || ||||| || | | |||| | || |||||| | || || || |
Sbjct 2839780 AGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAGACTCTATTGAGGGTATCT 2839721
Query 249086 ATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCC 249144
| ||||| || || || | || | ||| || || | || || || || |||||| |
Sbjct 2839720 ACGACACCCTCAAGACCTGC-GCCATGATCTCCAAGATGGCTGGTGGCATTGGTCTCAAC 2839662
Query 249145 GTCTC-CAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGG 249203
| ||| | || || || | || || || || || || || || | | ||
Sbjct 2839661 G-CTCACCGTATTCGTGCCACTGGCTCCTATATTGCCGGCACCAACGGCACCTCGAACGG 2839603
Query 249204 TATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCG 249263
| || | ||| | ||||| |||| | ||| || | | | || |||||| ||
Sbjct 2839602 TGTCATTCCCATGCTTCGTGTCTTTAACAACACTGCTCGCTACGTCGACCAGGGTGGCAA 2839543
Query 249264 C---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTT 249320
| || || | ||||| || || | || |||||||||||| | || |||||
Sbjct 2839542 CAAGCGTCCTGGCGCTTTCGCTATTTACCTTGAGCCGTGGCACGCCGACGTCTTCGAGTT 2839483
Query 249321 CCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGG 249380
| |||||||| |||||| | ||||| ||| | | || |||||||| ||| ||
Sbjct 2839482 CATGGACTTGCGCAAGAACCATGGCAAGGAGGAGGTCCGTGCCCGTGACCTTTTCCTCGC 2839423
Query 249381 CCTGTGGGTCTCCGACTTGTTCATG 249405
|| ||| || |||| ||||||||
Sbjct 2839422 TCTCTGGATCCCCGATCTGTTCATG 2839398
>seq13
Length=3673828
Score = 102 bits (112), Expect = 2e-16
Identities = 204/300 (68%), Gaps = 22/300 (7%)
Strand=Plus/Plus
Query 254100 CGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATC 254159
|||||||||||||| |||||||| ||||| || || | | | ||||| || ||| |
Sbjct 1335435 CGCGTGCTCGAGCTCAACGCTTCCGACGAGCGTGGAATCTCCATTGTCCGAGAGAAGGTG 1335494
Query 254160 AAG-ACTTT-CTC-CA---AGATGTCGATTTCGTCGTTCCAA--------------CCCG 254199
||| ||||| ||| || || || ||| || || | || |||
Sbjct 1335495 AAGGACTTTGCTCGCATGCAGTTGACGAACCCGACGAACGAATACAAGAAGAGATACCCT 1335554
Query 254200 GCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGC 254259
|| ||||| |||||| | | ||| |||||||||| ||| ||||||| ||||| |
Sbjct 1335555 --TGCCCGCCATTCAAGATTATCATCTTGGACGAGGCCGACTCCATGACCCAAGACGCAC 1335612
Query 254260 AGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGT 254319
|| ||| | ||||| || |||||||| || | | ||||| || |||||| | |
Sbjct 1335613 AGAGTGCCTTGCGCCGCACCATGGAGACATACAGCAAAATCACGCGGTTCTGCCTGATTT 1335672
Query 254320 GCAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379
|||||||||| || ||||||| ||| || ||| ||| ||| |||||| || ||||
Sbjct 1335673 GCAACTACGTCACGCGAATCATCGACCCCCTTGCTAGTCGTTGCAGCAAGTTCCGCTTCA 1335732
>seq8
Length=5005225
Score = 93.3 bits (102), Expect = 9e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 115416 CTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATGAACCGCGTCGTGCT 115475
||| | |||||||||||| ||| |||| | ||||||| | | | ||| ||||||||| |
Sbjct 2433122 CTGCAGCGGTTCGATGATCTTGTTGGACTGGTTGCAGGCGAAGGCGAAGCGCGTCGTGTT 2433063
Query 115476 CGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGTGTCATCGAGTCTGC 115535
||||| | ||||| |||| || || ||||| ||| || | |||||| ||| ||
Sbjct 2433062 GGAGTAGATTTCCATTGTCCGGCGGAGGGCCTGTTGAGCGCCTGATGTCATGCTGTCGGC 2433003
Query 115536 CTCGTCGAGAACGACAATCTT 115556
||||||||| | ||| | |||
Sbjct 2433002 CTCGTCGAGGATGACGAGCTT 2432982
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073765932240512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |