Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq6 120 7e-22 seq13 102 2e-16 seq8 93.3 9e-14 >seq6 Length=6290098 Score = 120 bits (132), Expect = 7e-22 Identities = 407/625 (65%), Gaps = 17/625 (3%) Strand=Plus/Minus Query 248791 GCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAA 248850 || |||| ||||| | || || | ||| | | ||| | ||||| || ||||||| | Sbjct 2840015 GCCATTGTCTACGACCGCGACTTCAACTACCAATACTTCGGCTTCAAGACCCTGGAGAGA 2839956 Query 248851 TCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGA 248910 || || || ||||| ||||||||||||| | || || ||||||||| | ||||| Sbjct 2839955 TCATACCTGCTCAAGCTTGATGGCAAGATTGCCGAGAGACCCCAGCACATGATCATGCGT 2839896 Query 248911 GTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATG 248970 || || ||||| || ||| || | ||| |||| ||||||| |||| | ||| Sbjct 2839895 GTTGCAGTCGGCATCTGGGGTGATAACGTCGAGCGCGTCATCGAGACCTACAACCTCATG 2839836 Query 248971 ---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAAC 249027 || | || | || |||||| | || || ||||||||||| |||||| | | Sbjct 2839835 TCCAGCAAGTTCT---TCACCCATGCCTCCCCCACACTCTTCAACGCTGGTACC--CCTC 2839781 Query 249028 AAT--CAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTT 249085 | | |||||| || ||||| || | | |||| | || |||||| | || || || | Sbjct 2839780 AGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAGACTCTATTGAGGGTATCT 2839721 Query 249086 ATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCC 249144 | ||||| || || || | || | ||| || || | || || || || |||||| | Sbjct 2839720 ACGACACCCTCAAGACCTGC-GCCATGATCTCCAAGATGGCTGGTGGCATTGGTCTCAAC 2839662 Query 249145 GTCTC-CAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGG 249203 | ||| | || || || | || || || || || || || || | | || Sbjct 2839661 G-CTCACCGTATTCGTGCCACTGGCTCCTATATTGCCGGCACCAACGGCACCTCGAACGG 2839603 Query 249204 TATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCG 249263 | || | ||| | ||||| |||| | ||| || | | | || |||||| || Sbjct 2839602 TGTCATTCCCATGCTTCGTGTCTTTAACAACACTGCTCGCTACGTCGACCAGGGTGGCAA 2839543 Query 249264 C---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTT 249320 | || || | ||||| || || | || |||||||||||| | || ||||| Sbjct 2839542 CAAGCGTCCTGGCGCTTTCGCTATTTACCTTGAGCCGTGGCACGCCGACGTCTTCGAGTT 2839483 Query 249321 CCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGG 249380 | |||||||| |||||| | ||||| ||| | | || |||||||| ||| || Sbjct 2839482 CATGGACTTGCGCAAGAACCATGGCAAGGAGGAGGTCCGTGCCCGTGACCTTTTCCTCGC 2839423 Query 249381 CCTGTGGGTCTCCGACTTGTTCATG 249405 || ||| || |||| |||||||| Sbjct 2839422 TCTCTGGATCCCCGATCTGTTCATG 2839398 >seq13 Length=3673828 Score = 102 bits (112), Expect = 2e-16 Identities = 204/300 (68%), Gaps = 22/300 (7%) Strand=Plus/Plus Query 254100 CGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATC 254159 |||||||||||||| |||||||| ||||| || || | | | ||||| || ||| | Sbjct 1335435 CGCGTGCTCGAGCTCAACGCTTCCGACGAGCGTGGAATCTCCATTGTCCGAGAGAAGGTG 1335494 Query 254160 AAG-ACTTT-CTC-CA---AGATGTCGATTTCGTCGTTCCAA--------------CCCG 254199 ||| ||||| ||| || || || ||| || || | || ||| Sbjct 1335495 AAGGACTTTGCTCGCATGCAGTTGACGAACCCGACGAACGAATACAAGAAGAGATACCCT 1335554 Query 254200 GCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGC 254259 || ||||| |||||| | | ||| |||||||||| ||| ||||||| ||||| | Sbjct 1335555 --TGCCCGCCATTCAAGATTATCATCTTGGACGAGGCCGACTCCATGACCCAAGACGCAC 1335612 Query 254260 AGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGT 254319 || ||| | ||||| || |||||||| || | | ||||| || |||||| | | Sbjct 1335613 AGAGTGCCTTGCGCCGCACCATGGAGACATACAGCAAAATCACGCGGTTCTGCCTGATTT 1335672 Query 254320 GCAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 |||||||||| || ||||||| ||| || ||| ||| ||| |||||| || |||| Sbjct 1335673 GCAACTACGTCACGCGAATCATCGACCCCCTTGCTAGTCGTTGCAGCAAGTTCCGCTTCA 1335732 >seq8 Length=5005225 Score = 93.3 bits (102), Expect = 9e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 115416 CTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATGAACCGCGTCGTGCT 115475 ||| | |||||||||||| ||| |||| | ||||||| | | | ||| ||||||||| | Sbjct 2433122 CTGCAGCGGTTCGATGATCTTGTTGGACTGGTTGCAGGCGAAGGCGAAGCGCGTCGTGTT 2433063 Query 115476 CGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGTGTCATCGAGTCTGC 115535 ||||| | ||||| |||| || || ||||| ||| || | |||||| ||| || Sbjct 2433062 GGAGTAGATTTCCATTGTCCGGCGGAGGGCCTGTTGAGCGCCTGATGTCATGCTGTCGGC 2433003 Query 115536 CTCGTCGAGAACGACAATCTT 115556 ||||||||| | ||| | ||| Sbjct 2433002 CTCGTCGAGGATGACGAGCTT 2432982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073765932240512