Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq10 131 1e-25
seq6 102 6e-17
>seq10
Length=4416304
Score = 131 bits (144), Expect = 1e-25
Identities = 160/217 (74%), Gaps = 1/217 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || ||| ||||||||| |||||||||||| || ||| |||| ||
Sbjct 3556424 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 3556483
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || ||||||||||| |||| ||||| |||||||| || | ||||||||||||
Sbjct 3556484 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 3556543
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| ||||||||| | ||| || ||||||
Sbjct 3556544 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTG 3556603
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG-TTGCCT 45343
|||||||| ||||| || ||||| |||||| ||||||
Sbjct 3556604 CCCGTCAGGGTCTTGACGAAGATCTGCATGATTGCCT 3556640
>seq6
Length=6290098
Score = 102 bits (112), Expect = 6e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205
|||||||| |||||||| ||| |||| |||| | || ||||| || ||||| |||||
Sbjct 607801 TCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCTTCCAGCTGCTTTCCAGCGAAG 607742
Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265
|| | ||||| ||||| || || | ||||||||||||| || || ||| ||
Sbjct 607741 ATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTCACATTA 607682
Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325
| | |||| ||| || |||| ||||||||||| || ||||| ||||| ||
Sbjct 607681 TCAATCGTGTCAGATGACTCGACTTCCAATGTAATCGTCTTTCCAGTCAGCGTCTTGACG 607622
Query 45326 AAGATTTGCAT 45336
||||| |||||
Sbjct 607621 AAGATCTGCAT 607611
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193
||||| || |||||||||||||||||| || || ||| | || || || ||
Sbjct 607585 TGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGACAAGGTACGACCATCCTCAAGCTGC 607526
Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253
||||||||||| ||||| ||||| ||||||||||| | |||||||| || || ||
Sbjct 607525 TTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATGCCCTCCTTATCTTGGATCTTC 607466
Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313
||| || | | | |||| | || ||||| | |||||||||||||| ||
Sbjct 607465 GACTTGACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGTCTTGCCTGTA 607406
Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| || || || |||||
Sbjct 607405 AGGGTCTTGACGAAAATCTGCAT 607383
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| || || ||| |||||||||||||||||||||| ||| ||| | || ||
Sbjct 607363 ACCAAATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCA 607304
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
||||| || || || || ||||| ||||| ||||| || || | |||||||| ||| |
Sbjct 607303 AGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGA 607244
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | || | ||| ||||| | ||| || ||||||
Sbjct 607243 ATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTG 607184
Query 45308 CCCGTCAGAGTCTTCAC 45324
|| || || ||||| ||
Sbjct 607183 CCAGTGAGCGTCTTGAC 607167
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395075036290714
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |