Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq10 131 1e-25 seq6 102 6e-17 >seq10 Length=4416304 Score = 131 bits (144), Expect = 1e-25 Identities = 160/217 (74%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| |||||||||||| || ||| |||| || Sbjct 3556424 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 3556483 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| |||| ||||| |||||||| || | |||||||||||| Sbjct 3556484 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 3556543 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| ||||||||| | ||| || |||||| Sbjct 3556544 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTG 3556603 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG-TTGCCT 45343 |||||||| ||||| || ||||| |||||| |||||| Sbjct 3556604 CCCGTCAGGGTCTTGACGAAGATCTGCATGATTGCCT 3556640 >seq6 Length=6290098 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||| ||| |||| |||| | || ||||| || ||||| ||||| Sbjct 607801 TCCTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCTTCCAGCTGCTTTCCAGCGAAG 607742 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | ||||| ||||| || || | ||||||||||||| || || ||| || Sbjct 607741 ATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTCACATTA 607682 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| ||| || |||| ||||||||||| || ||||| ||||| || Sbjct 607681 TCAATCGTGTCAGATGACTCGACTTCCAATGTAATCGTCTTTCCAGTCAGCGTCTTGACG 607622 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 607621 AAGATCTGCAT 607611 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 ||||| || |||||||||||||||||| || || ||| | || || || || Sbjct 607585 TGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGACAAGGTACGACCATCCTCAAGCTGC 607526 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 ||||||||||| ||||| ||||| ||||||||||| | |||||||| || || || Sbjct 607525 TTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATGCCCTCCTTATCTTGGATCTTC 607466 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | |||| | || ||||| | |||||||||||||| || Sbjct 607465 GACTTGACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGTCTTGCCTGTA 607406 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || || || ||||| Sbjct 607405 AGGGTCTTGACGAAAATCTGCAT 607383 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || ||| |||||||||||||||||||||| ||| ||| | || || Sbjct 607363 ACCAAATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCA 607304 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || || || ||||| ||||| ||||| || || | |||||||| ||| | Sbjct 607303 AGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGA 607244 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | || | ||| ||||| | ||| || |||||| Sbjct 607243 ATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTG 607184 Query 45308 CCCGTCAGAGTCTTCAC 45324 || || || ||||| || Sbjct 607183 CCAGTGAGCGTCTTGAC 607167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075036290714