Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq6 311 8e-80
seq9 127 2e-24
seq10 107 2e-18
>seq6
Length=6290098
Score = 311 bits (344), Expect = 8e-80
Identities = 588/860 (68%), Gaps = 4/860 (0%)
Strand=Plus/Plus
Query 23118 TCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGA 23177
|||||||||| || || ||| | ||||||||| |||||| | || |||| ||||||
Sbjct 2839163 TCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGG 2839222
Query 23178 CCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCT-G 23236
||| | ||||| ||| || ||| | |||| || | | ||| || ||| |
Sbjct 2839223 TCTGAGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTGATG-GTCTTGCGACCCTTG 2839281
Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296
|| || ||||||||| | |||||| || || || || | || || ||||| ||||||
Sbjct 2839282 CCCTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCATAGCAGTCAGCCAGG 2839341
Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATA 23356
|| || | | | || |||||||| |||| | || || || || | ||||
Sbjct 2839342 CCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATG 2839401
Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416
|| ||||| || ||||| |||||| ||| || || ||||| || |||||||| |||||
Sbjct 2839402 AACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCA 2839461
Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476
|||||| ||| |||| || || || ||||| || ||||||||||| |||||||
Sbjct 2839462 TGGTTCTTGCGCAAGTCCATGAACTCGAAGACGTCGGCGTGCCACGGCTCAAGGTAAATA 2839521
Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536
|| || ||||| || | ||| ||||| ||||| |||||||| || || |||||||| |
Sbjct 2839522 GCGAAAGCGCCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTAAAG 2839581
Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCT 23596
|| | ||||| || | || |||||| || | |||| ||| || | | || ||
Sbjct 2839582 ACACGAAGCATGGGAATGACACCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCA 2839641
Query 23597 TTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCG 23656
| || |||| |||| ||| || ||| ||||| || || || || ||||| |||
Sbjct 2839642 GTGGCACGAATACGGTGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCG 2839701
Query 23657 CATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAA 23716
|| || || ||||||||||| ||||| || ||| || || | |||| | |||
Sbjct 2839702 CAGGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAG 2839761
Query 23717 CACGAAGACATTTGCGCTTTG-GGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGT 23775
|| ||||||| || || || || ||| | || ||| ||||| ||| ||| || ||
Sbjct 2839762 CATGAAGACAGCTG-GCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGT 2839820
Query 23776 AAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTG 23835
||| | | ||||| || ||||| || |||||| || || | || || ||
Sbjct 2839821 GAAGAACTTGCTGGACATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCA 2839880
Query 23836 TATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAAT 23895
|| |||| || || ||||| ||||||| || ||||||||| | | ||| | ||
Sbjct 2839881 GATGCCGACTGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAG 2839940
Query 23896 TTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACG 23955
|||| ||| ||||| | | || || || || || || || | ||||| ||||| ||
Sbjct 2839941 CTTGAGCAGGTATGATCTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCG 2840000
Query 23956 ATCGTGCACTATGGCCGAAT 23975
|||| || ||||| ||||
Sbjct 2840001 GTCGTAGACAATGGCAGAAT 2840020
Score = 116 bits (128), Expect = 3e-21
Identities = 349/531 (66%), Gaps = 11/531 (2%)
Strand=Plus/Plus
Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204
|| || || || |||||||||||||| ||||| | |||||| || || || ||
Sbjct 2838190 GTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATACTG 2838249
Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264
|| | || || |||| | ||||| | || | ||||| ||| |||||
Sbjct 2838250 GTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTAAGGGACTGGGACTGGTCGATG 2838309
Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324
|| || || || ||||| ||||| | | | || ||| || || ||||| ||||||
Sbjct 2838310 AAGGCACCACGGTCGGCAGCCATCTGAACAACGGTGCGCTGGGAGATCTCCCAAACGGTC 2838369
Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGAT-TCGATCCTCTGGACGGACCCGTTATT 22383
|||||||| | ||| ||| | ||| | | | ||| |||||| || ||||| |
Sbjct 2838370 TTGTACAGAGCCTTGACCTC-AGCGGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTC 2838428
Query 22384 GTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGAC 22443
| ||||| || || || | |||| ||||| || ||| || | ||| || |
Sbjct 2838429 GGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAA 2838488
Query 22444 CAGATGACGGTTCACCACTTGAAACTCGCCGGACAAG-ACGCGGCGTTGGTAAATGTTGG 22502
|| |||| || || || |||||||||| |||| || || |||||||| |||||||
Sbjct 2838489 CAACCAGGGGTTGACAACCTGGAACTCGCCGG-CAAGAACACGACGTTGGTAGATGTTGG 2838547
Query 22503 ATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCA 22562
| ||| | || ||||| | || ||||| |||| ||||| | || || || || ||||
Sbjct 2838548 AGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCA 2838607
Query 22563 TCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCAT 22620
| || || | || | ||| | || ||||||| |||| | | || | | |
Sbjct 2838608 TGGGAGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGTGAGT 2838667
Query 22621 CGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTG 22671
| ||| ||||| || || || ||| | ||||| |||||| ||||| ||
Sbjct 2838668 C--CCAATCCCAGAGGTCAGAGGGCTTGACATT---CCACATGTCGTACTG 2838713
Score = 113 bits (124), Expect = 4e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| ||||| || || ||||| || | || || || | ||
Sbjct 607611 ATGCAGATCTTCGTCAAGACGCTGACTGGAAAGACGATTACATTGGAAGTCGAGTCATCT 607670
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || || | || ||||||||| || | || || ||||||
Sbjct 607671 GACACGATTGATAATGTGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 607730
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || |||||||| || ||| ||||||| | ||| |||||||||| |||
Sbjct 607731 CAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAAGATGGTCGCACTCTGAGCGATTACAAC 607790
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || || ||||| || || |||||||| ||
Sbjct 607791 ATCCAGAAGGAATCAACCCTCCATCTGGTCCT 607822
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| ||||| || |||||||| ||||| || |||| |||||| | ||
Sbjct 607383 ATGCAGATTTTCGTCAAGACCCTTACAGGCAAGACGATTACGCTCGAGGTTGAATCTTCA 607442
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | ||||| || || || ||||| ||| | || |||||||||
Sbjct 607443 GACACCATTGACAACGTCAAGTCGAAGATCCAAGATAAGGAGGGCATTCCTCCCGACCAG 607502
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| | || ||||| || || ||| | || || | || || ||||| |||
Sbjct 607503 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCGGATTACAAC 607562
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || || || ||||| ||||| || || | ||| | || ||||
Sbjct 607563 ATTCAGAAGGAGTCAACTCTGCATCTCGTCCTGCGTCTGCGTGGTGGTA 607611
>seq9
Length=4851470
Score = 127 bits (140), Expect = 2e-24
Identities = 236/344 (69%), Gaps = 8/344 (2%)
Strand=Plus/Plus
Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022
|||||| || | || | || || ||||| || || ||||| ||||| || |||
Sbjct 3450525 TTCGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTT 3450584
Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082
|| | || |||||| | ||||| || ||||| |||||||| ||||| || |||||||
Sbjct 3450585 GCCTCCATCTTTTGGCTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAG 3450644
Query 58083 TTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATT 58142
| || || || ||||||||||| || || || ||||| ||||| |||||||||||
Sbjct 3450645 CTCATCTCCCGTGACGAGGGTCTGCACACCGACTTTGCCTGCCTCTTGTACTCTCAC--- 3450701
Query 58143 GTCAATAAACCGACGC----GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGAT 58198
|||| |||| | | | | ||| |||||| ||| || || ||| |||
Sbjct 3450702 CTCAA-GCACCGCCCCAACAAGCAGGTCATTGAGGACATCATCGTTGATGCCGTCAAGAT 3450760
Query 58199 CGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTT 58258
|| | ||||| |||| || || || || || | ||||| |||||| | ||
Sbjct 3450761 TGAGCAGGAGTTCCTCACTGAGGCTCTGCCCTGCGCTCTTCTCGGCATGAACTCCAACTT 3450820
Query 58259 GATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCG 58302
|||| ||||||||||||| ||||||||| | || || |||
Sbjct 3450821 GATGAAGCAGTACATTGAGTTCGTTGCCGACCGCCTCCTGGTCG 3450864
Score = 91.5 bits (100), Expect = 1e-13
Identities = 201/300 (67%), Gaps = 5/300 (2%)
Strand=Plus/Plus
Query 57563 TCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGT 57622
|||||| | ||| | |||||||| ||||| || || || || ||||||| ||| || |
Sbjct 3450071 TCCAGA--TCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGAT 3450128
Query 57623 AGACCTGTCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTT 57679
|| || || |||||||| ||| ||| | | |||| || ||||| | ||
Sbjct 3450129 TGATCTCTCCAAGGATCTCCACGACTGGAACAACAAGATCAACGATGATGAGAAGTACTT 3450188
Query 57680 TATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739
|| ||| | | || || ||||||||||| || ||||| || || ||||| ||||
Sbjct 3450189 CATCTCTCACATTCTTGCCTTCTTCGCCGCATCGGACGGTATCGTCAATGAGAACCTGGT 3450248
Query 57740 CGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGT 57799
||| | || || || || || || | ||||| | ||||| ||||| || || |
Sbjct 3450249 CGAGCGCTTCTCCGGCGAGGTCCAGGTCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGAT 3450308
Query 57800 GGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859
|| || ||| | || || || | || || || |||||||| || ||| | |||||
Sbjct 3450309 CATGATGGAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGA 3450368
>seq10
Length=4416304
Score = 107 bits (118), Expect = 2e-18
Identities = 164/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
||| |||||| || ||||| ||||| ||||| ||||| || |||||| | || || ||
Sbjct 3556637 CAATCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGT 3556578
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
||||||||| |||| | ||||| | || ||||||||| ||| | || ||||
Sbjct 3556577 CGTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCG 3556518
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||||||||| || || ||||| || || ||| | || ||| || | ||| |
Sbjct 3556517 ACCAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACT 3556458
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
| ||||| || || || || || || || ||||| || | ||| | || ||||
Sbjct 3556457 ACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTA 3556404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445766210549280
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