Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq6 311 8e-80 seq9 127 2e-24 seq10 107 2e-18 >seq6 Length=6290098 Score = 311 bits (344), Expect = 8e-80 Identities = 588/860 (68%), Gaps = 4/860 (0%) Strand=Plus/Plus Query 23118 TCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGA 23177 |||||||||| || || ||| | ||||||||| |||||| | || |||| |||||| Sbjct 2839163 TCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGG 2839222 Query 23178 CCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCT-G 23236 ||| | ||||| ||| || ||| | |||| || | | ||| || ||| | Sbjct 2839223 TCTGAGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTGATG-GTCTTGCGACCCTTG 2839281 Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296 || || ||||||||| | |||||| || || || || | || || ||||| |||||| Sbjct 2839282 CCCTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCATAGCAGTCAGCCAGG 2839341 Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATA 23356 || || | | | || |||||||| |||| | || || || || | |||| Sbjct 2839342 CCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATG 2839401 Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 || ||||| || ||||| |||||| ||| || || ||||| || |||||||| ||||| Sbjct 2839402 AACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCA 2839461 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 |||||| ||| |||| || || || ||||| || ||||||||||| ||||||| Sbjct 2839462 TGGTTCTTGCGCAAGTCCATGAACTCGAAGACGTCGGCGTGCCACGGCTCAAGGTAAATA 2839521 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 || || ||||| || | ||| ||||| ||||| |||||||| || || |||||||| | Sbjct 2839522 GCGAAAGCGCCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTAAAG 2839581 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCT 23596 || | ||||| || | || |||||| || | |||| ||| || | | || || Sbjct 2839582 ACACGAAGCATGGGAATGACACCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCA 2839641 Query 23597 TTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCG 23656 | || |||| |||| ||| || ||| ||||| || || || || ||||| ||| Sbjct 2839642 GTGGCACGAATACGGTGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCG 2839701 Query 23657 CATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAA 23716 || || || ||||||||||| ||||| || ||| || || | |||| | ||| Sbjct 2839702 CAGGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAG 2839761 Query 23717 CACGAAGACATTTGCGCTTTG-GGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGT 23775 || ||||||| || || || || ||| | || ||| ||||| ||| ||| || || Sbjct 2839762 CATGAAGACAGCTG-GCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGT 2839820 Query 23776 AAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTG 23835 ||| | | ||||| || ||||| || |||||| || || | || || || Sbjct 2839821 GAAGAACTTGCTGGACATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCA 2839880 Query 23836 TATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAAT 23895 || |||| || || ||||| ||||||| || ||||||||| | | ||| | || Sbjct 2839881 GATGCCGACTGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAG 2839940 Query 23896 TTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACG 23955 |||| ||| ||||| | | || || || || || || || | ||||| ||||| || Sbjct 2839941 CTTGAGCAGGTATGATCTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCG 2840000 Query 23956 ATCGTGCACTATGGCCGAAT 23975 |||| || ||||| |||| Sbjct 2840001 GTCGTAGACAATGGCAGAAT 2840020 Score = 116 bits (128), Expect = 3e-21 Identities = 349/531 (66%), Gaps = 11/531 (2%) Strand=Plus/Plus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 || || || || |||||||||||||| ||||| | |||||| || || || || Sbjct 2838190 GTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATACTG 2838249 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || |||| | ||||| | || | ||||| ||| ||||| Sbjct 2838250 GTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTAAGGGACTGGGACTGGTCGATG 2838309 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324 || || || || ||||| ||||| | | | || ||| || || ||||| |||||| Sbjct 2838310 AAGGCACCACGGTCGGCAGCCATCTGAACAACGGTGCGCTGGGAGATCTCCCAAACGGTC 2838369 Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGAT-TCGATCCTCTGGACGGACCCGTTATT 22383 |||||||| | ||| ||| | ||| | | | ||| |||||| || ||||| | Sbjct 2838370 TTGTACAGAGCCTTGACCTC-AGCGGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTC 2838428 Query 22384 GTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGAC 22443 | ||||| || || || | |||| ||||| || ||| || | ||| || | Sbjct 2838429 GGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAA 2838488 Query 22444 CAGATGACGGTTCACCACTTGAAACTCGCCGGACAAG-ACGCGGCGTTGGTAAATGTTGG 22502 || |||| || || || |||||||||| |||| || || |||||||| ||||||| Sbjct 2838489 CAACCAGGGGTTGACAACCTGGAACTCGCCGG-CAAGAACACGACGTTGGTAGATGTTGG 2838547 Query 22503 ATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCA 22562 | ||| | || ||||| | || ||||| |||| ||||| | || || || || |||| Sbjct 2838548 AGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCA 2838607 Query 22563 TCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCAT 22620 | || || | || | ||| | || ||||||| |||| | | || | | | Sbjct 2838608 TGGGAGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGTGAGT 2838667 Query 22621 CGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTG 22671 | ||| ||||| || || || ||| | ||||| |||||| ||||| || Sbjct 2838668 C--CCAATCCCAGAGGTCAGAGGGCTTGACATT---CCACATGTCGTACTG 2838713 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| || || ||||| || | || || || | || Sbjct 607611 ATGCAGATCTTCGTCAAGACGCTGACTGGAAAGACGATTACATTGGAAGTCGAGTCATCT 607670 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||| || | || || |||||| Sbjct 607671 GACACGATTGATAATGTGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 607730 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| ||||||| | ||| |||||||||| ||| Sbjct 607731 CAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAAGATGGTCGCACTCTGAGCGATTACAAC 607790 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| || || |||||||| || Sbjct 607791 ATCCAGAAGGAATCAACCCTCCATCTGGTCCT 607822 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || |||||||| ||||| || |||| |||||| | || Sbjct 607383 ATGCAGATTTTCGTCAAGACCCTTACAGGCAAGACGATTACGCTCGAGGTTGAATCTTCA 607442 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || || || ||||| ||| | || ||||||||| Sbjct 607443 GACACCATTGACAACGTCAAGTCGAAGATCCAAGATAAGGAGGGCATTCCTCCCGACCAG 607502 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| || || ||| | || || | || || ||||| ||| Sbjct 607503 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACCTTGTCGGATTACAAC 607562 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || ||||| ||||| || || | ||| | || |||| Sbjct 607563 ATTCAGAAGGAGTCAACTCTGCATCTCGTCCTGCGTCTGCGTGGTGGTA 607611 >seq9 Length=4851470 Score = 127 bits (140), Expect = 2e-24 Identities = 236/344 (69%), Gaps = 8/344 (2%) Strand=Plus/Plus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022 |||||| || | || | || || ||||| || || ||||| ||||| || ||| Sbjct 3450525 TTCGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTT 3450584 Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082 || | || |||||| | ||||| || ||||| |||||||| ||||| || ||||||| Sbjct 3450585 GCCTCCATCTTTTGGCTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAG 3450644 Query 58083 TTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATT 58142 | || || || ||||||||||| || || || ||||| ||||| ||||||||||| Sbjct 3450645 CTCATCTCCCGTGACGAGGGTCTGCACACCGACTTTGCCTGCCTCTTGTACTCTCAC--- 3450701 Query 58143 GTCAATAAACCGACGC----GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGAT 58198 |||| |||| | | | | ||| |||||| ||| || || ||| ||| Sbjct 3450702 CTCAA-GCACCGCCCCAACAAGCAGGTCATTGAGGACATCATCGTTGATGCCGTCAAGAT 3450760 Query 58199 CGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTT 58258 || | ||||| |||| || || || || || | ||||| |||||| | || Sbjct 3450761 TGAGCAGGAGTTCCTCACTGAGGCTCTGCCCTGCGCTCTTCTCGGCATGAACTCCAACTT 3450820 Query 58259 GATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCG 58302 |||| ||||||||||||| ||||||||| | || || ||| Sbjct 3450821 GATGAAGCAGTACATTGAGTTCGTTGCCGACCGCCTCCTGGTCG 3450864 Score = 91.5 bits (100), Expect = 1e-13 Identities = 201/300 (67%), Gaps = 5/300 (2%) Strand=Plus/Plus Query 57563 TCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGT 57622 |||||| | ||| | |||||||| ||||| || || || || ||||||| ||| || | Sbjct 3450071 TCCAGA--TCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGAT 3450128 Query 57623 AGACCTGTCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTT 57679 || || || |||||||| ||| ||| | | |||| || ||||| | || Sbjct 3450129 TGATCTCTCCAAGGATCTCCACGACTGGAACAACAAGATCAACGATGATGAGAAGTACTT 3450188 Query 57680 TATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 || ||| | | || || ||||||||||| || ||||| || || ||||| |||| Sbjct 3450189 CATCTCTCACATTCTTGCCTTCTTCGCCGCATCGGACGGTATCGTCAATGAGAACCTGGT 3450248 Query 57740 CGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGT 57799 ||| | || || || || || || | ||||| | ||||| ||||| || || | Sbjct 3450249 CGAGCGCTTCTCCGGCGAGGTCCAGGTCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGAT 3450308 Query 57800 GGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 || || ||| | || || || | || || || |||||||| || ||| | ||||| Sbjct 3450309 CATGATGGAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGA 3450368 >seq10 Length=4416304 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| ||||| ||||| || |||||| | || || || Sbjct 3556637 CAATCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGT 3556578 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 ||||||||| |||| | ||||| | || ||||||||| ||| | || |||| Sbjct 3556577 CGTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCG 3556518 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || ||||| || || ||| | || ||| || | ||| | Sbjct 3556517 ACCAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACT 3556458 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || || || || || || || ||||| || | ||| | || |||| Sbjct 3556457 ACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTA 3556404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766210549280