Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq9 129 1e-24
seq6 98.7 2e-15
>seq9
Length=4851470
Score = 129 bits (142), Expect = 1e-24
Identities = 297/441 (67%), Gaps = 11/441 (2%)
Strand=Plus/Plus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
||||||||||| || ||||| || |||||||| || ||||| || || ||||| || |||
Sbjct 3450540 GTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTTTGG 3450599
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
||||||| | || | |||| ||||| |||| |||||| ||| |||| || | |||
Sbjct 3450600 CTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCCCGTGAC 3450659
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGA-TACCCC 102096
|| ||||| || ||||||||| ||| || ||| | | | | ||| |
Sbjct 3450660 GAGGGTCTGCACACCGACTTTGCCTGC---CTCTTG---TACTCTCACCTCAAGCACCGC 3450713
Query 102097 ATCAAGAGAAAGG--ATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154
||| | ||| ||| || || || ||| |||||| ||||| || || ||
Sbjct 3450714 CCCAACAAGCAGGTCATTGAGGACATCATCGTTGATGCCGTCAAGATTGAGCAGGAGTTC 3450773
Query 102155 CTCACAGTTTCCCTG-CCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTA 102213
||||| | | ||| |||| || | || ||||||| ||| ||||||| |||||
Sbjct 3450774 CTCACTGAGGCTCTGCCCTGCGCTCTT-CTCGGCATGAACTCCAACTTGATGAAGCAGTA 3450832
Query 102214 CATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGT 102273
|||||| || || || || || |||| | | || || ||| ||| ||
Sbjct 3450833 CATTGAGTTCGTTGCCGACCGCCTCCTGGTCGCTCTTGGCAACGACAAGGTCTACAAGTC 3450892
Query 102274 TACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGA 102333
||||||||||| |||||||| || || ||||| | ||||||||||| |||||
Sbjct 3450893 CTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTTGA 3450952
Query 102334 AAAGAGAGTCGCCGAGTATCA 102354
||| | ||||| || || ||
Sbjct 3450953 GAAGCGTGTCGCTGACTACCA 3450973
>seq6
Length=6290098
Score = 98.7 bits (108), Expect = 2e-15
Identities = 122/168 (73%), Gaps = 12/168 (7%)
Strand=Plus/Plus
Query 94392 ACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTC 94451
||| ||||| || ||| || ||||||||||| |||| ||||| ||||||| | |||
Sbjct 2839275 ACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCATAGCAGTC 2839334
Query 94452 GGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCA------ATTCTTCCCAGCCTT 94505
| |||||||||||||| | ||||||||| |||| ||| ||||| ||
Sbjct 2839335 AGCCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTT------CTC 2839388
Query 94506 CACTCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATC 94553
||||||| |||||| ||||| | | ||||| ||| ||||||| ||
Sbjct 2839389 GACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTC 2839436
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989583568912470
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |