Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq9 129 1e-24 seq6 98.7 2e-15 >seq9 Length=4851470 Score = 129 bits (142), Expect = 1e-24 Identities = 297/441 (67%), Gaps = 11/441 (2%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||| || ||||| || |||||||| || ||||| || || ||||| || ||| Sbjct 3450540 GTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTTTGG 3450599 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | || | |||| ||||| |||| |||||| ||| |||| || | ||| Sbjct 3450600 CTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCCCGTGAC 3450659 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGA-TACCCC 102096 || ||||| || ||||||||| ||| || ||| | | | | ||| | Sbjct 3450660 GAGGGTCTGCACACCGACTTTGCCTGC---CTCTTG---TACTCTCACCTCAAGCACCGC 3450713 Query 102097 ATCAAGAGAAAGG--ATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154 ||| | ||| ||| || || || ||| |||||| ||||| || || || Sbjct 3450714 CCCAACAAGCAGGTCATTGAGGACATCATCGTTGATGCCGTCAAGATTGAGCAGGAGTTC 3450773 Query 102155 CTCACAGTTTCCCTG-CCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTA 102213 ||||| | | ||| |||| || | || ||||||| ||| ||||||| ||||| Sbjct 3450774 CTCACTGAGGCTCTGCCCTGCGCTCTT-CTCGGCATGAACTCCAACTTGATGAAGCAGTA 3450832 Query 102214 CATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGT 102273 |||||| || || || || || |||| | | || || ||| ||| || Sbjct 3450833 CATTGAGTTCGTTGCCGACCGCCTCCTGGTCGCTCTTGGCAACGACAAGGTCTACAAGTC 3450892 Query 102274 TACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGA 102333 ||||||||||| |||||||| || || ||||| | ||||||||||| ||||| Sbjct 3450893 CTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTTGA 3450952 Query 102334 AAAGAGAGTCGCCGAGTATCA 102354 ||| | ||||| || || || Sbjct 3450953 GAAGCGTGTCGCTGACTACCA 3450973 >seq6 Length=6290098 Score = 98.7 bits (108), Expect = 2e-15 Identities = 122/168 (73%), Gaps = 12/168 (7%) Strand=Plus/Plus Query 94392 ACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTC 94451 ||| ||||| || ||| || ||||||||||| |||| ||||| ||||||| | ||| Sbjct 2839275 ACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCATAGCAGTC 2839334 Query 94452 GGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCA------ATTCTTCCCAGCCTT 94505 | |||||||||||||| | ||||||||| |||| ||| ||||| || Sbjct 2839335 AGCCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTT------CTC 2839388 Query 94506 CACTCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATC 94553 ||||||| |||||| ||||| | | ||||| ||| ||||||| || Sbjct 2839389 GACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTC 2839436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583568912470