Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq6 141 1e-28
seq9 100 4e-16
>seq6
Length=6290098
Score = 141 bits (156), Expect = 1e-28
Identities = 632/983 (64%), Gaps = 30/983 (3%)
Strand=Plus/Plus
Query 62943 GCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTC 63001
|||| || |||| || || || || ||||||| | | |||| || | || |||||
Sbjct 2839066 GCAAGGGAAGCCAAGTTGCAGACAGCGACCTCATCGGG-TGCGCAGTACTCAATGATCTC 2839124
Query 63002 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63061
||||||||| || | ||||||||| | || | || || ||||| |||
Sbjct 2839125 AGTGCAAAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGC 2839184
Query 63062 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63121
|||||||| ||||| ||||| || | ||||| || |||||| || | || || |
Sbjct 2839185 AGCATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATA 2839244
Query 63122 CCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT----TCGTATAGA 63176
||| | | || | ||||| || | ||| | |||| | || |||||
Sbjct 2839245 CCAAA-GCTTCTGGGCCTTGATGGTC---TTGCGAC-CCTTGCCCTCGCGCTCGTACTTC 2839299
Query 63177 GTATACAATCGTTCGAACTCGTCTCCCCAAA-CATTGT-CCAATCTAGGACATTCATCCG 63234
||||| |||||||| ||| ||| | || | ||| | ||| || |||| |
Sbjct 2839300 TCGTACAAGGCCTCGAACTC--CTCGCCATAGCAGTCAGCCAGGCCAGGGCACTCATTGG 2839357
Query 63235 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63294
| ||||| | | ||| || ||| | || |||| ||||| || ||||| || ||||
Sbjct 2839358 GGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCC 2839417
Query 63295 AAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63354
| ||||| | || || || | | | ||||| || || ||||| | |
Sbjct 2839418 AGAGAGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGT 2839477
Query 63355 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63414
| | |||| | | | || | |||||||| || | ||| || || | | | ||||| |
Sbjct 2839478 CCATGAACTCGAAGACGTCGGCGTGCCACGGCTCAAGGTAAATAGCGAAAGCGCCAGGAC 2839537
Query 63415 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 63474
| ||||| || ||||| || | ||| | ||| ||||| ||| | || | | ||| ||||
Sbjct 2839538 GCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAA 2839597
Query 63475 TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTAC 63534
| | |||||| || | || ||||| |||| |||||| ||| |||||||||||
Sbjct 2839598 TGACACCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGAATA-CGG 2839656
Query 63535 TAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593
| | | | ||||| || || || ||||| || ||||| | ||||| || | |||
Sbjct 2839657 TGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTG 2839716
Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653
|| ||||| || || || || || |||||| | || || || ||||| |||
Sbjct 2839717 TCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGG 2839776
Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 63713
||| || || || || || | || || || || || || || | || ||
Sbjct 2839777 CACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGTGAAGAACTTGCTGGAC 2839836
Query 63714 AGTAGATTGTACGTCTCAAT----AGCT-GAGTCTAT-ATCCCATTGATGAATTCCTACT 63767
| || ||||| ||||| || ||| || ||| | |||| |||| || |||
Sbjct 2839837 ATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCA--GATG----CCGACT 2839890
Query 63768 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAG 63827
|| |||||||| | ||||||||| ||||| || |||| ||| | | || | || |
Sbjct 2839891 GCAACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGCAGG 2839950
Query 63828 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 63887
|| ||| | |||| || || || || || || | ||| ||||| || ||||| | |
Sbjct 2839951 TATGATCTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACA 2840010
Query 63888 ATAACCGAATTGAGCTTATCCTT 63910
|| | |||| ||||| |||||
Sbjct 2840011 ATGGCAGAATCGAGCTCTTCCTT 2840033
>seq9
Length=4851470
Score = 100 bits (110), Expect = 4e-16
Identities = 148/209 (71%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641
|| || || ||| ||||||||||||||| | || | ||||| || || || ||
Sbjct 3450685 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGA 3450626
Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701
|||||||| ||||||||||| || |||||||| ||||| || || | ||| ||||||
Sbjct 3450625 CCGGGCATGAGGCCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAG 3450566
Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT---GT 33758
|| || || || || |||||||||| || | || | | || | | ||||
Sbjct 3450565 ATACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAGGAGTTCTCATCGCTG 3450506
Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTT 33787
|||||||| | ||||| || ||||||||
Sbjct 3450505 ATCCACTTCAGGGCCCAGTCAGCCTTCTT 3450477
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629817332327520
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