Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6 141 1e-28 seq9 100 4e-16 >seq6 Length=6290098 Score = 141 bits (156), Expect = 1e-28 Identities = 632/983 (64%), Gaps = 30/983 (3%) Strand=Plus/Plus Query 62943 GCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTC 63001 |||| || |||| || || || || ||||||| | | |||| || | || ||||| Sbjct 2839066 GCAAGGGAAGCCAAGTTGCAGACAGCGACCTCATCGGG-TGCGCAGTACTCAATGATCTC 2839124 Query 63002 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63061 ||||||||| || | ||||||||| | || | || || ||||| ||| Sbjct 2839125 AGTGCAAAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGC 2839184 Query 63062 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63121 |||||||| ||||| ||||| || | ||||| || |||||| || | || || | Sbjct 2839185 AGCATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATA 2839244 Query 63122 CCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT----TCGTATAGA 63176 ||| | | || | ||||| || | ||| | |||| | || ||||| Sbjct 2839245 CCAAA-GCTTCTGGGCCTTGATGGTC---TTGCGAC-CCTTGCCCTCGCGCTCGTACTTC 2839299 Query 63177 GTATACAATCGTTCGAACTCGTCTCCCCAAA-CATTGT-CCAATCTAGGACATTCATCCG 63234 ||||| |||||||| ||| ||| | || | ||| | ||| || |||| | Sbjct 2839300 TCGTACAAGGCCTCGAACTC--CTCGCCATAGCAGTCAGCCAGGCCAGGGCACTCATTGG 2839357 Query 63235 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63294 | ||||| | | ||| || ||| | || |||| ||||| || ||||| || |||| Sbjct 2839358 GGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCC 2839417 Query 63295 AAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63354 | ||||| | || || || | | | ||||| || || ||||| | | Sbjct 2839418 AGAGAGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGT 2839477 Query 63355 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63414 | | |||| | | | || | |||||||| || | ||| || || | | | ||||| | Sbjct 2839478 CCATGAACTCGAAGACGTCGGCGTGCCACGGCTCAAGGTAAATAGCGAAAGCGCCAGGAC 2839537 Query 63415 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 63474 | ||||| || ||||| || | ||| | ||| ||||| ||| | || | | ||| |||| Sbjct 2839538 GCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAA 2839597 Query 63475 TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTAC 63534 | | |||||| || | || ||||| |||| |||||| ||| ||||||||||| Sbjct 2839598 TGACACCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGAATA-CGG 2839656 Query 63535 TAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593 | | | | ||||| || || || ||||| || ||||| | ||||| || | ||| Sbjct 2839657 TGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTG 2839716 Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653 || ||||| || || || || || |||||| | || || || ||||| ||| Sbjct 2839717 TCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGG 2839776 Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 63713 ||| || || || || || | || || || || || || || | || || Sbjct 2839777 CACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGTGAAGAACTTGCTGGAC 2839836 Query 63714 AGTAGATTGTACGTCTCAAT----AGCT-GAGTCTAT-ATCCCATTGATGAATTCCTACT 63767 | || ||||| ||||| || ||| || ||| | |||| |||| || ||| Sbjct 2839837 ATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCA--GATG----CCGACT 2839890 Query 63768 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAG 63827 || |||||||| | ||||||||| ||||| || |||| ||| | | || | || | Sbjct 2839891 GCAACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGCAGG 2839950 Query 63828 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 63887 || ||| | |||| || || || || || || | ||| ||||| || ||||| | | Sbjct 2839951 TATGATCTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACA 2840010 Query 63888 ATAACCGAATTGAGCTTATCCTT 63910 || | |||| ||||| ||||| Sbjct 2840011 ATGGCAGAATCGAGCTCTTCCTT 2840033 >seq9 Length=4851470 Score = 100 bits (110), Expect = 4e-16 Identities = 148/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||| ||||||||||||||| | || | ||||| || || || || Sbjct 3450685 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGA 3450626 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| ||||||||||| || |||||||| ||||| || || | ||| |||||| Sbjct 3450625 CCGGGCATGAGGCCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAG 3450566 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT---GT 33758 || || || || || |||||||||| || | || | | || | | |||| Sbjct 3450565 ATACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAGGAGTTCTCATCGCTG 3450506 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 |||||||| | ||||| || |||||||| Sbjct 3450505 ATCCACTTCAGGGCCCAGTCAGCCTTCTT 3450477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817332327520