Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6 131 2e-25 seq9 118 2e-21 >seq6 Length=6290098 Score = 131 bits (144), Expect = 2e-25 Identities = 560/875 (64%), Gaps = 24/875 (3%) Strand=Plus/Plus Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 ||||| || || | || ||||| | | ||| || | | | || |||| ||||| Sbjct 2839342 CCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATG 2839401 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 || ||||| || ||||| ||||| | || || || | || | |||||| || || Sbjct 2839402 AACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCA 2839461 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 ||||| | || | |||| | | | || | |||||||| || | ||| || Sbjct 2839462 TGGTTCTTGCGCAAGTCCATGAACTCGAAGACGTCGGCGTGCCACGGCTCAAGGTAAATA 2839521 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | | | || || || ||||| || ||||| || | ||| | ||| ||||| ||| | Sbjct 2839522 GCGAAAGCGCCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTAAAG 2839581 Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190 || | | ||| ||||| | ||| || || || || ||||| |||| |||||| ||| Sbjct 2839582 ACACGAAGCATGGGAATGACACCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCA 2839641 Query 80191 CTGGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 80249 ||||||||||| | | | | ||||| || || || ||||| || ||||| | || Sbjct 2839642 GTGGCACGAATA-CGGTGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGC 2839700 Query 80250 GCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAA 80309 ||| || | || || ||||| ||||| || || || |||||| | || || Sbjct 2839701 GCAGGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAA 2839760 Query 80310 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 80369 || ||||| ||| || || || || || || | || || || || || || Sbjct 2839761 GCATGAAGACAGCTGGCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGT 2839820 Query 80370 AAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT----AGCT-GATTCTAT-ATCCCA 80423 || | || |||| || ||||| ||||| || ||| || ||| | |||| Sbjct 2839821 GAAGAACTTGCTGGACATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCA 2839880 Query 80424 TTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 80483 |||| || || || |||||||| | ||||||||| ||||| || | |||||| Sbjct 2839881 --GATG----CCGACTGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCC 2839934 Query 80484 ATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 80543 || | || | || ||| ||| | |||| || || || || || || | ||| || Sbjct 2839935 ATCAAGCTTGAGCAGGTATGATCTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAA 2839994 Query 80544 GTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCAT 80603 ||| || ||||| | ||| | || | ||| | ||||| | | | | || |||| Sbjct 2839995 GTCGCGGTCGTAGACAATGGCAGAATCGAGCTCTTCCTTGTGTCTCATGACGGCATCGTA 2840054 Query 80604 GGTGATACTT-GAAATAATCGGAGA----ATGTTTCCCATTTTTAGGATTAACATAGTTG 80658 || | ||| | ||| || ||||| |||| ||| | || || ||||||| | Sbjct 2840055 TGT-CTCCTTGGCAATCATGGGAGACGCCCTGTT----GTTTCTGGGGTTGACATAGTGG 2840109 Query 80659 AATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACG 80718 | | || || || | || | || ||||| | |||||| || || || ||| Sbjct 2840110 TAGAGGTCGCTAATGACCGAAGACCATTGCTTCTTTGTCTGCTTGTGGAGGTTGGAGACG 2840169 Query 80719 GCTATTCTGGCGGCTAAAATGGCATAATCTGGATG 80753 ||||| | ||| || | |||||||| || || || Sbjct 2840170 GCTATGCGGGCAGCGAGGATGGCATAGTCGGGGTG 2840204 >seq9 Length=4851470 Score = 118 bits (130), Expect = 2e-21 Identities = 152/209 (73%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||||||||||||||| | || || |||||||| || || || Sbjct 3450685 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGA 3450626 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| ||||||||||| || |||||||| ||||| ||||| | || |||||| Sbjct 3450625 CCGGGCATGAGGCCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAG 3450566 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCAT---GT 50136 || || || || |||||||||||||| || | || | | || | | |||| Sbjct 3450565 ATACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAGGAGTTCTCATCGCTG 3450506 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTT 50165 |||||||| | ||||| || |||||||| Sbjct 3450505 ATCCACTTCAGGGCCCAGTCAGCCTTCTT 3450477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268494735760