Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq6 143 4e-29 seq9 95.1 2e-14 >seq6 Length=6290098 Score = 143 bits (158), Expect = 4e-29 Identities = 563/875 (64%), Gaps = 24/875 (3%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 ||||| || ||||| || ||||| | | ||| || | | | | |||| ||||| Sbjct 2839342 CCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATG 2839401 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 || ||||| || ||||| ||||| | || || || | || | |||||| || || Sbjct 2839402 AACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCA 2839461 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| | || | |||| | | | || | |||||||| || | ||| || Sbjct 2839462 TGGTTCTTGCGCAAGTCCATGAACTCGAAGACGTCGGCGTGCCACGGCTCAAGGTAAATA 2839521 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | | || || || ||||| || ||||| || | ||| | ||| ||||| ||| | Sbjct 2839522 GCGAAAGCGCCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTAAAG 2839581 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | | ||| ||||| | ||| || || | || ||||| |||| |||||| ||| Sbjct 2839582 ACACGAAGCATGGGAATGACACCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCA 2839641 Query 72274 CTGGCACGAATATTGCTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 72332 ||||||||||| | | | | | ||||| || || || ||||| || ||||| | || Sbjct 2839642 GTGGCACGAATA-CGGTGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGC 2839700 Query 72333 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 72392 ||| || | || || ||||| ||||| ||| || ||| |||||| | || || Sbjct 2839701 GCAGGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAA 2839760 Query 72393 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 72452 || ||||| ||| || || || || || || | || || || || || || Sbjct 2839761 GCATGAAGACAGCTGGCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGT 2839820 Query 72453 AAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT----AGCT-GATTCTAT-ATCCCA 72506 || | || |||| || ||||| ||||| || ||| || ||| | |||| Sbjct 2839821 GAAGAACTTGCTGGACATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCA 2839880 Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTT 72566 |||| || || || |||||||| | ||| ||||| ||||| || | |||||| Sbjct 2839881 --GATG----CCGACTGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCC 2839934 Query 72567 ATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 72626 || | || | || ||| ||| | |||| || || || || || || | ||| || Sbjct 2839935 ATCAAGCTTGAGCAGGTATGATCTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAA 2839994 Query 72627 GTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCAT 72686 ||| || ||||| | ||| | |||| ||| | ||||| | | | | || ||| Sbjct 2839995 GTCGCGGTCGTAGACAATGGCAGAATCGAGCTCTTCCTTGTGTCTCATGACGGCATCGTA 2840054 Query 72687 GGTGATACTT-GAAATAATCGGAGA----ATGTTTCCCATTTTTAGGATTAACATAGTTG 72741 || | ||| | ||| || ||||| |||| ||| | || || ||||||| | Sbjct 2840055 TGT-CTCCTTGGCAATCATGGGAGACGCCCTGTT----GTTTCTGGGGTTGACATAGTGG 2840109 Query 72742 AATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACG 72801 | | || || || | || | || ||||| | |||||| || || || ||| Sbjct 2840110 TAGAGGTCGCTAATGACCGAAGACCATTGCTTCTTTGTCTGCTTGTGGAGGTTGGAGACG 2840169 Query 72802 GCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 ||||| | ||| || || |||||||| || || || Sbjct 2840170 GCTATGCGGGCAGCGAGGATGGCATAGTCGGGGTG 2840204 >seq9 Length=4851470 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||| |||||||||||| || | || | |||||||| || || || Sbjct 3450685 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGA 3450626 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| ||||||||||| || |||||||| || || ||||| | || |||||| Sbjct 3450625 CCGGGCATGAGGCCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAG 3450566 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAA 42209 || || || || || |||||||||| Sbjct 3450565 ATACCCTCAACAGCGGCAAAGGCAA 3450541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138914765840