Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq6 143 4e-29
seq9 95.1 2e-14
>seq6
Length=6290098
Score = 143 bits (158), Expect = 4e-29
Identities = 563/875 (64%), Gaps = 24/875 (3%)
Strand=Plus/Plus
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033
||||| || ||||| || ||||| | | ||| || | | | | |||| |||||
Sbjct 2839342 CCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATG 2839401
Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093
|| ||||| || ||||| ||||| | || || || | || | |||||| || ||
Sbjct 2839402 AACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCA 2839461
Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153
||||| | || | |||| | | | || | |||||||| || | ||| ||
Sbjct 2839462 TGGTTCTTGCGCAAGTCCATGAACTCGAAGACGTCGGCGTGCCACGGCTCAAGGTAAATA 2839521
Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213
|| | | | || || || ||||| || ||||| || | ||| | ||| ||||| ||| |
Sbjct 2839522 GCGAAAGCGCCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTAAAG 2839581
Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273
|| | | ||| ||||| | ||| || || | || ||||| |||| |||||| |||
Sbjct 2839582 ACACGAAGCATGGGAATGACACCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCA 2839641
Query 72274 CTGGCACGAATATTGCTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 72332
||||||||||| | | | | | ||||| || || || ||||| || ||||| | ||
Sbjct 2839642 GTGGCACGAATA-CGGTGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGC 2839700
Query 72333 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 72392
||| || | || || ||||| ||||| ||| || ||| |||||| | || ||
Sbjct 2839701 GCAGGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAA 2839760
Query 72393 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 72452
|| ||||| ||| || || || || || || | || || || || || ||
Sbjct 2839761 GCATGAAGACAGCTGGCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGT 2839820
Query 72453 AAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT----AGCT-GATTCTAT-ATCCCA 72506
|| | || |||| || ||||| ||||| || ||| || ||| | ||||
Sbjct 2839821 GAAGAACTTGCTGGACATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCA 2839880
Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTT 72566
|||| || || || |||||||| | ||| ||||| ||||| || | ||||||
Sbjct 2839881 --GATG----CCGACTGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCC 2839934
Query 72567 ATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 72626
|| | || | || ||| ||| | |||| || || || || || || | ||| ||
Sbjct 2839935 ATCAAGCTTGAGCAGGTATGATCTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAA 2839994
Query 72627 GTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCAT 72686
||| || ||||| | ||| | |||| ||| | ||||| | | | | || |||
Sbjct 2839995 GTCGCGGTCGTAGACAATGGCAGAATCGAGCTCTTCCTTGTGTCTCATGACGGCATCGTA 2840054
Query 72687 GGTGATACTT-GAAATAATCGGAGA----ATGTTTCCCATTTTTAGGATTAACATAGTTG 72741
|| | ||| | ||| || ||||| |||| ||| | || || ||||||| |
Sbjct 2840055 TGT-CTCCTTGGCAATCATGGGAGACGCCCTGTT----GTTTCTGGGGTTGACATAGTGG 2840109
Query 72742 AATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACG 72801
| | || || || | || | || ||||| | |||||| || || || |||
Sbjct 2840110 TAGAGGTCGCTAATGACCGAAGACCATTGCTTCTTTGTCTGCTTGTGGAGGTTGGAGACG 2840169
Query 72802 GCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836
||||| | ||| || || |||||||| || || ||
Sbjct 2840170 GCTATGCGGGCAGCGAGGATGGCATAGTCGGGGTG 2840204
>seq9
Length=4851470
Score = 95.1 bits (104), Expect = 2e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124
|| || || ||| |||||||||||| || | || | |||||||| || || ||
Sbjct 3450685 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGA 3450626
Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184
|||||||| ||||||||||| || |||||||| || || ||||| | || ||||||
Sbjct 3450625 CCGGGCATGAGGCCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAG 3450566
Query 42185 ATTCCTTCTACTGCCGCAAAGGCAA 42209
|| || || || || ||||||||||
Sbjct 3450565 ATACCCTCAACAGCGGCAAAGGCAA 3450541
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671138914765840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |