Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6 163 4e-35 seq9 143 4e-29 >seq6 Length=6290098 Score = 163 bits (180), Expect = 4e-35 Identities = 307/446 (69%), Gaps = 4/446 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || |||||| | || | ||| | || || |||||||| ||| Sbjct 2839553 CAGGGTGGCAACAAGCGTCCTGGCGCTTTCGCTATTTACCTTGAGCCGTGGCACGCCGAC 2839494 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || || || ||||||| ||| |||| || |||| || ||| | ||| Sbjct 2839493 GTCTTCGAGTTCATGGACTTGCGCAAGAACCATGGCAAGGAGGAGGTCCGTGCCCGTGAC 2839434 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || |||||| | || ||| ||||||||||| | ||| | | | | || Sbjct 2839433 CTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGAACGCCGAC 2839374 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| ||| ||||||||| | || || || ||| | || |||| ||||| ||||| Sbjct 2839373 TGGACCCTCATGTGCCCCAATGAGTGCCCTGGCCTGGCTGACTGCTATGGCGAGGAGTTC 2839314 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174 |||||| |||| | ||||||| |||||| | || |||| | || | || | Sbjct 2839313 GAGGCCTTGTACGAGAAGTACGAGCGCGAGGGCAAGGGTCGCAAGACCA-TCAAGGC-CC 2839256 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| || ||| | |||||| | ||||||| |||||||| | || | ||| || | Sbjct 2839255 AGAAGCTTTGGTATGCCATCCTCGAGGCTCAGACCGAGACTGGCAACCCCTTCATGCTTT 2839196 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 |||||||| | | || ||||| |||||||| || | || || ||| |||||| Sbjct 2839195 ACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGAACTATCCGCAGCTCCA 2839136 Query 97294 ATCTGTGCACGGAAATTGTAGAGTAC 97319 | || ||||| || || | |||||| Sbjct 2839135 ACCTTTGCACTGAGATCATTGAGTAC 2839110 >seq9 Length=4851470 Score = 143 bits (158), Expect = 4e-29 Identities = 345/515 (67%), Gaps = 23/515 (4%) Strand=Plus/Plus Query 125348 CACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAA 125407 ||| || || | || || || |||||| | |||| | ||||||| || || || Sbjct 3450458 CACAGTCCCTGCCATTCGCAAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAGAA 3450517 Query 125408 GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 || || | |||| | | ||||| || || ||||| || ||||| |||||||| || Sbjct 3450518 CTCCTCCTTCGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGG 3450577 Query 125468 TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 | |||||| |||||||||||||||||||||| || ||||||||||| ||||| | Sbjct 3450578 TGCTTTTGCCTCCATCTTTTGGCTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTC 3450637 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT-TTC 125586 |||||| | || || || |||||||| || ||| ||||||||| || ||| || Sbjct 3450638 CAACGAGCTCATCTCCCGTGACGAGGGTCTGCACACCGACTTTGCCTGCCTCTTGTACTC 3450697 Query 125587 GCAACT--ATCTGCGTCCCGA-GTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAA 125643 || || | | || ||| | |||| || || ||| ||||| | || Sbjct 3450698 TCACCTCAAGCACCGCCCCAACAAGCAGGTC-----AT--TGAGGACATCATCGTT---- 3450746 Query 125644 CCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTG 125703 |||||||| | ||| || || ||||| || || || | || || | | | | Sbjct 3450747 --GATGCCGTCAAGATTGAGCAGGAGTTCCTCACTGAGGCTCTGCCCTGCGCTCTTCTCG 3450804 Query 125704 GCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACG 125763 ||||||||| ||| | ||| ||||||| ||||| || || || || || ||| || Sbjct 3450805 GCATGAACTCCAACTTGATGAAGCAGTACATTGAGTTCGTTGCCGACCGCCTCCTGGTCG 3450864 Query 125764 AGTTGATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCA 125820 ||||| || |||| | ||||| || || ||||| || |||||| | || Sbjct 3450865 ---CTCTTGGCAACGACAAGGTCTACAAGTCCTCCAACCCCTTCGACTTCATGGAGAACA 3450921 Query 125821 TATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 | || || | || ||||||||||| || |||||| Sbjct 3450922 TCTCCCTTGGCGGCAAGACCAACTTCTTTGAGAAG 3450956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058885049840