Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq6 163 4e-35
seq9 143 4e-29
>seq6
Length=6290098
Score = 163 bits (180), Expect = 4e-35
Identities = 307/446 (69%), Gaps = 4/446 (1%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || || |||||| | || | ||| | || || |||||||| |||
Sbjct 2839553 CAGGGTGGCAACAAGCGTCCTGGCGCTTTCGCTATTTACCTTGAGCCGTGGCACGCCGAC 2839494
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| || || || || || ||||||| ||| |||| || |||| || ||| | |||
Sbjct 2839493 GTCTTCGAGTTCATGGACTTGCGCAAGAACCATGGCAAGGAGGAGGTCCGTGCCCGTGAC 2839434
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
| || || |||||| | || ||| ||||||||||| | ||| | | | | ||
Sbjct 2839433 CTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGAACGCCGAC 2839374
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| ||| ||||||||| | || || || ||| | || |||| ||||| |||||
Sbjct 2839373 TGGACCCTCATGTGCCCCAATGAGTGCCCTGGCCTGGCTGACTGCTATGGCGAGGAGTTC 2839314
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174
|||||| |||| | ||||||| |||||| | || |||| | || | || |
Sbjct 2839313 GAGGCCTTGTACGAGAAGTACGAGCGCGAGGGCAAGGGTCGCAAGACCA-TCAAGGC-CC 2839256
Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233
|||| || ||| | |||||| | ||||||| |||||||| | || | ||| || |
Sbjct 2839255 AGAAGCTTTGGTATGCCATCCTCGAGGCTCAGACCGAGACTGGCAACCCCTTCATGCTTT 2839196
Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293
|||||||| | | || ||||| |||||||| || | || || ||| ||||||
Sbjct 2839195 ACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGAACTATCCGCAGCTCCA 2839136
Query 97294 ATCTGTGCACGGAAATTGTAGAGTAC 97319
| || ||||| || || | ||||||
Sbjct 2839135 ACCTTTGCACTGAGATCATTGAGTAC 2839110
>seq9
Length=4851470
Score = 143 bits (158), Expect = 4e-29
Identities = 345/515 (67%), Gaps = 23/515 (4%)
Strand=Plus/Plus
Query 125348 CACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAA 125407
||| || || | || || || |||||| | |||| | ||||||| || || ||
Sbjct 3450458 CACAGTCCCTGCCATTCGCAAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAGAA 3450517
Query 125408 GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467
|| || | |||| | | ||||| || || ||||| || ||||| |||||||| ||
Sbjct 3450518 CTCCTCCTTCGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGG 3450577
Query 125468 TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527
| |||||| |||||||||||||||||||||| || ||||||||||| ||||| |
Sbjct 3450578 TGCTTTTGCCTCCATCTTTTGGCTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTC 3450637
Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT-TTC 125586
|||||| | || || || |||||||| || ||| ||||||||| || ||| ||
Sbjct 3450638 CAACGAGCTCATCTCCCGTGACGAGGGTCTGCACACCGACTTTGCCTGCCTCTTGTACTC 3450697
Query 125587 GCAACT--ATCTGCGTCCCGA-GTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAA 125643
|| || | | || ||| | |||| || || ||| ||||| | ||
Sbjct 3450698 TCACCTCAAGCACCGCCCCAACAAGCAGGTC-----AT--TGAGGACATCATCGTT---- 3450746
Query 125644 CCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTG 125703
|||||||| | ||| || || ||||| || || || | || || | | | |
Sbjct 3450747 --GATGCCGTCAAGATTGAGCAGGAGTTCCTCACTGAGGCTCTGCCCTGCGCTCTTCTCG 3450804
Query 125704 GCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACG 125763
||||||||| ||| | ||| ||||||| ||||| || || || || || ||| ||
Sbjct 3450805 GCATGAACTCCAACTTGATGAAGCAGTACATTGAGTTCGTTGCCGACCGCCTCCTGGTCG 3450864
Query 125764 AGTTGATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCA 125820
||||| || |||| | ||||| || || ||||| || |||||| | ||
Sbjct 3450865 ---CTCTTGGCAACGACAAGGTCTACAAGTCCTCCAACCCCTTCGACTTCATGGAGAACA 3450921
Query 125821 TATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855
| || || | || ||||||||||| || ||||||
Sbjct 3450922 TCTCCCTTGGCGGCAAGACCAACTTCTTTGAGAAG 3450956
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741058885049840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |