Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq17 98.7 9e-16 >seq17 Length=2392175 Score = 98.7 bits (108), Expect = 9e-16 Identities = 186/270 (69%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 99502 CGCCCCCAGCCCAGGCTGGCGTGCGAGCCCGGCGCCCCGCTCCGCACGGTGAGCGAGGTG 99561 ||| ||||||| || ||||||| ||| || | | | |||||| || || | ||| Sbjct 1120205 CGCTCCCAGCCGCGGTTGGCGTGGGAGTTCGCCTCGTGGGCCCGCACCGTCAGGCACGTG 1120264 Query 99562 TTGAGCAGCAGCACGCCGCGGCGCGCCCAGGCCTCCAGGCAGCCG----TGCTGCGGCCG 99617 ||||| || || ||||||||| ||||||| |||| |||| || || || | Sbjct 1120265 TTGAGGAGGAGGACGCCGCGGTCGGCCCAGGGGGTCAGGAGGCCGCCCTTGTTGGGGG-G 1120323 Query 99618 CGGGGTCCCGG--GGA-AGTTCTTCTGCACGGCCGCGTAGATGTTCTGGAGGCTGGGCGG 99674 ||||| || ||| ||| ||||| || ||| ||| ||||||| ||| ||| || Sbjct 1120324 CGGGGAGAAGGAAGGATAGTCCTTCTTCAGGGCGATGTACATGTTCTTGAGAGAGGGGGG 1120383 Query 99675 GATCGGAACGCCGCGGTTCACGCTGAAGGCCAGGCCGTGGGCCTGCCCGTGGCTGTGGTA 99734 ||| | || ||| |||||| || ||||||||||| | ||||||| Sbjct 1120384 CGCCGGGGTGGGCGGGCGGACGGAGAAGGCGAGACCGTGGGCCTGGTTTACGTTGTGGTA 1120443 Query 99735 GGGGTCCTGGCCCAGGATGACGACCTTGAC 99764 |||||| ||||| ||||||||||||||||| Sbjct 1120444 GGGGTCTTGGCCGAGGATGACGACCTTGAC 1120473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440899012617840