Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6 114 3e-20 seq9 93.3 1e-13 >seq6 Length=6290098 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | ||| || || |||||||| || ||||| || || || | || || Sbjct 607367 AAGAACCAAATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATC 607308 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || ||||| || |||||||| || | | ||| || ||||| || || || || ||||| Sbjct 607307 CTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTATC 607248 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| | || ||||| || | |||||| || || ||||| || || || || Sbjct 607247 CTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGT 607188 Query 104527 CTTACCAGTAAGTGTTTTTAC 104547 ||| ||||| || || || || Sbjct 607187 CTTGCCAGTGAGCGTCTTGAC 607167 >seq9 Length=4851470 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/202 (71%), Gaps = 3/202 (1%) Strand=Plus/Plus Query 269085 CTGAATGGGCTCTGAAATGGATAAACGAT-AGCGCGCCT--TACGGAGAAAGGTTAGTTG 269141 |||| ||||| ||||| ||||| | |||| || | ||| | || | | | |||| Sbjct 3450484 CTGACTGGGCCCTGAAGTGGATCAGCGATGAGAACTCCTCCTTCGCCCAGCGTCTGGTTG 3450543 Query 269142 CTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGA 269201 | ||||||||||| || ||||| ||||| || |||||||| | ||||||||| | | Sbjct 3450544 CCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTTTGGCTCA 3450603 Query 269202 AGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAG 269261 |||| | ||||| ||||| || | || ||||| ||||| | || | | ||||| | Sbjct 3450604 AGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCCCGTGACGAGG 3450663 Query 269262 GTTTACACTGCGACTTCGCTTG 269283 || | ||| |||||| || || Sbjct 3450664 GTCTGCACACCGACTTTGCCTG 3450685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397898422072