Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq6 114 3e-20
seq9 93.3 1e-13
>seq6
Length=6290098
Score = 114 bits (126), Expect = 3e-20
Identities = 146/201 (73%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || | ||| | ||| || || |||||||| || ||||| || || || | || ||
Sbjct 607367 AAGAACCAAATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATC 607308
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| ||||| || |||||||| || | | ||| || ||||| || || || || |||||
Sbjct 607307 CTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTATC 607248
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||||||||| | || ||||| || | |||||| || || ||||| || || || ||
Sbjct 607247 CTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGT 607188
Query 104527 CTTACCAGTAAGTGTTTTTAC 104547
||| ||||| || || || ||
Sbjct 607187 CTTGCCAGTGAGCGTCTTGAC 607167
>seq9
Length=4851470
Score = 93.3 bits (102), Expect = 1e-13
Identities = 143/202 (71%), Gaps = 3/202 (1%)
Strand=Plus/Plus
Query 269085 CTGAATGGGCTCTGAAATGGATAAACGAT-AGCGCGCCT--TACGGAGAAAGGTTAGTTG 269141
|||| ||||| ||||| ||||| | |||| || | ||| | || | | | ||||
Sbjct 3450484 CTGACTGGGCCCTGAAGTGGATCAGCGATGAGAACTCCTCCTTCGCCCAGCGTCTGGTTG 3450543
Query 269142 CTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGA 269201
| ||||||||||| || ||||| ||||| || |||||||| | ||||||||| | |
Sbjct 3450544 CCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTTTGGCTCA 3450603
Query 269202 AGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAG 269261
|||| | ||||| ||||| || | || ||||| ||||| | || | | ||||| |
Sbjct 3450604 AGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCCCGTGACGAGG 3450663
Query 269262 GTTTACACTGCGACTTCGCTTG 269283
|| | ||| |||||| || ||
Sbjct 3450664 GTCTGCACACCGACTTTGCCTG 3450685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151397898422072
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |