Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq13 127 2e-24 >seq13 Length=3673828 Score = 127 bits (140), Expect = 2e-24 Identities = 182/254 (72%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||| ||||| ||||| ||||| | | | || || || || ||||| Sbjct 1523767 ACGCCGGTGCTGCCGAACCCGCCAGCGCCGCGCACGCTTTCCTCGAGCTCGGCGACCTCG 1523708 Query 5561 TCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | || ||||| | | || ||||||| || ||||| || || ||||||||| Sbjct 1523707 ACGACCTCGGG-AGTGAAGATGCGCTCGATAATGAGCTGGGCGATGCGGTCGCCCTCGGC 1523649 Query 5620 TACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 |||||||||||| ||| | || |||||| || | || || | |||||||||||| Sbjct 1523648 AACCTCGAAATCGGTGTCGGCGTGGTTGAAGAGGAGGACCTTGACCTGGCCGCGGTAGTC 1523589 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGG 5739 ||| || || ||||| ||||| ||||||||||| |||| || ||||| |||||||| Sbjct 1523588 GGCATCGATGACGCCGGCGCCGGTGTCGATGAAGTTCTTGGAGGCGAGGCCAGAGCGGGG 1523529 Query 5740 AGCCACGCGGCCGT 5753 ||| |||||||||| Sbjct 1523528 AGCAACGCGGCCGT 1523515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430054221796208