Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 2e-16 seq9 96.9 5e-16 >seq6 Length=6290098 Score = 98.7 bits (108), Expect = 2e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| |||| ||| | ||| ||||||| || ||| || | ||||| Sbjct 2626499 TGATCTACGAGGAGACCCGTGGTGTCCTCAAGTCCTTCCTCGAGGGCGTCATTCGTGATG 2626558 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 || || ||| || |||||||| || || ||||||||||| || | ||| | ||||| | Sbjct 2626559 CTGTCACCTACACTGAGCACGCCAAGCGCAAGACTGTCACTTCTCTTGATGTTGTCTACG 2626618 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | ||||| || |||||||| | | || ||||| || ||||| Sbjct 2626619 CGTTGAAGCGCCAAGGCCGCACCCTGTACGGTTTCGGTGGTTAA 2626662 Score = 89.7 bits (98), Expect = 8e-14 Identities = 82/101 (81%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| | | || || ||||| || || ||||| ||||| || || Sbjct 2626338 GCCAAGCGTCACCGCAAGATTT-TGCGTGACAACATTCAGGGTATCACGAAGCCTGCCAT 2626396 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||||||||| || ||||||||||| ||||||||| | |||| Sbjct 2626397 CCGTCGTCTCGCACGTCGTGGTGGTGTCAAGCGTATTTCTG 2626437 >seq9 Length=4851470 Score = 96.9 bits (106), Expect = 5e-16 Identities = 84/102 (82%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| | | || || ||||| || || || |||||||| |||| Sbjct 4508877 CGCCAAGCGTCACCGCAAGATTT-TGCGTGACAACATTCAGGGTATTACCAAGCCCGCTA 4508935 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||| ||||| |||||||||||||| ||||||||| | |||| Sbjct 4508936 TCCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 4508977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075168913562