Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq6 147 3e-30
seq9 105 8e-18
>seq6
Length=6290098
Score = 147 bits (162), Expect = 3e-30
Identities = 741/1159 (64%), Gaps = 40/1159 (3%)
Strand=Plus/Plus
Query 62892 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTC 62950
|||| || |||| || || || || ||||||| | | |||| || | || |||||
Sbjct 2839066 GCAAGGGAAGCCAAGTTGCAGACAGCGACCTCATCGGG-TGCGCAGTACTCAATGATCTC 2839124
Query 62951 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63010
||||||||| || | ||||||||| | || | || || ||||| |||
Sbjct 2839125 AGTGCAAAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGC 2839184
Query 63011 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63070
|||||||| ||||| ||||| || | ||||| || |||||| || | || || |
Sbjct 2839185 AGCATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATA 2839244
Query 63071 CCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT----TCGTATAGT 63125
||| | | || | ||||| || | ||| | |||| | || |||||
Sbjct 2839245 CCAAA-GCTTCTGGGCCTTGATGGTC---TTGCGAC-CCTTGCCCTCGCGCTCGTACTTC 2839299
Query 63126 GTATACAATCGTTCGAACTCGTCTCCCCAAA-CATTGT-CCAATCCAGGACATTCATCCG 63183
||||| |||||||| ||| ||| | || | ||| ||||| || |||| |
Sbjct 2839300 TCGTACAAGGCCTCGAACTC--CTCGCCATAGCAGTCAGCCAGGCCAGGGCACTCATTGG 2839357
Query 63184 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63243
| ||||| | | ||| || ||| | || |||| ||||| || ||||| || ||||
Sbjct 2839358 GGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCC 2839417
Query 63244 AAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63303
| ||||| | || || || | || | ||||| || || ||||| | |
Sbjct 2839418 AGAGAGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGT 2839477
Query 63304 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63363
| | |||| | | | || | |||||||| || | ||| || || | | | ||||| |
Sbjct 2839478 CCATGAACTCGAAGACGTCGGCGTGCCACGGCTCAAGGTAAATAGCGAAAGCGCCAGGAC 2839537
Query 63364 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 63423
| ||||| || ||||| || | ||| | ||| ||||| ||| | || | | ||| ||||
Sbjct 2839538 GCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAA 2839597
Query 63424 TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTAC 63483
| | |||||| || | || ||||| |||| |||||| ||| |||||||||||
Sbjct 2839598 TGACACCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGAATA-CGG 2839656
Query 63484 TAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63542
| | | | ||||| || || || ||||| || ||||| | ||||| || | |||
Sbjct 2839657 TGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTG 2839716
Query 63543 TCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63602
|| ||||||||||| || || || |||||| | || || || ||||| |||
Sbjct 2839717 TCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGG 2839776
Query 63603 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 63662
|| || || || || || | || || || || || || || | || ||
Sbjct 2839777 CACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGTGAAGAACTTGCTGGAC 2839836
Query 63663 AGTAGATTGTACGTCTCAAT----AGCT-GAGTCTAT-ATCCCATTGATGAATTCCTACT 63716
| || ||||| ||||| || ||| || ||| | |||| |||| || |||
Sbjct 2839837 ATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCA--GATG----CCGACT 2839890
Query 63717 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAG 63776
|| |||||||| | ||||||||| ||||| || | |||||| | | || | || |
Sbjct 2839891 GCAACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGCAGG 2839950
Query 63777 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 63836
|| ||| | |||| || || || || || || | ||| ||||| || ||||| | |
Sbjct 2839951 TATGATCTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACA 2840010
Query 63837 ATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAAT 63895
|| | || | ||| | ||||| | | | | || ||| || | ||| | |||
Sbjct 2840011 ATGGCAGAATCGAGCTCTTCCTTGTGTCTCATGACGGCATCGTATGT-CTCCTTGGCAAT 2840069
Query 63896 AATCGGAGA----ATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCA 63951
|| ||||| |||| ||| | || || ||||||| | | | || || |
Sbjct 2840070 CATGGGAGACGCCCTGTT----GTTTCTGGGGTTGACATAGTGGTAGAGGTCGCTAATGA 2840125
Query 63952 CTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTA 64011
| | || | || ||||| | |||||| || || || |||||||| | ||| || |
Sbjct 2840126 CCGAAGACCATTGCTTCTTTGTCTGCTTGTGGAGGTTGGAGACGGCTATGCGGGCAGCGA 2840185
Query 64012 GAATGGCATAATCCGGATG 64030
| |||||||| || || ||
Sbjct 2840186 GGATGGCATAGTCGGGGTG 2840204
>seq9
Length=4851470
Score = 105 bits (116), Expect = 8e-18
Identities = 149/209 (71%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363
|| || || ||| ||||||||||||||| | || || |||||||| || || ||
Sbjct 3450685 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGA 3450626
Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423
|||||||| ||||||||||| || |||||||| ||||| || || | || ||||||
Sbjct 3450625 CCGGGCATGAGGCCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAG 3450566
Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT---GT 33480
|| || || || || |||||||||| || | || | | || | | ||||
Sbjct 3450565 ATACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAGGAGTTCTCATCGCTG 3450506
Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTT 33509
|||||||| | ||||| || ||||||||
Sbjct 3450505 ATCCACTTCAGGGCCCAGTCAGCCTTCTT 3450477
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622946935247440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |