Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq6 147 3e-30 seq9 105 8e-18 >seq6 Length=6290098 Score = 147 bits (162), Expect = 3e-30 Identities = 741/1159 (64%), Gaps = 40/1159 (3%) Strand=Plus/Plus Query 62892 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTC 62950 |||| || |||| || || || || ||||||| | | |||| || | || ||||| Sbjct 2839066 GCAAGGGAAGCCAAGTTGCAGACAGCGACCTCATCGGG-TGCGCAGTACTCAATGATCTC 2839124 Query 62951 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63010 ||||||||| || | ||||||||| | || | || || ||||| ||| Sbjct 2839125 AGTGCAAAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGC 2839184 Query 63011 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63070 |||||||| ||||| ||||| || | ||||| || |||||| || | || || | Sbjct 2839185 AGCATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATA 2839244 Query 63071 CCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT----TCGTATAGT 63125 ||| | | || | ||||| || | ||| | |||| | || ||||| Sbjct 2839245 CCAAA-GCTTCTGGGCCTTGATGGTC---TTGCGAC-CCTTGCCCTCGCGCTCGTACTTC 2839299 Query 63126 GTATACAATCGTTCGAACTCGTCTCCCCAAA-CATTGT-CCAATCCAGGACATTCATCCG 63183 ||||| |||||||| ||| ||| | || | ||| ||||| || |||| | Sbjct 2839300 TCGTACAAGGCCTCGAACTC--CTCGCCATAGCAGTCAGCCAGGCCAGGGCACTCATTGG 2839357 Query 63184 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63243 | ||||| | | ||| || ||| | || |||| ||||| || ||||| || |||| Sbjct 2839358 GGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCC 2839417 Query 63244 AAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63303 | ||||| | || || || | || | ||||| || || ||||| | | Sbjct 2839418 AGAGAGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGT 2839477 Query 63304 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63363 | | |||| | | | || | |||||||| || | ||| || || | | | ||||| | Sbjct 2839478 CCATGAACTCGAAGACGTCGGCGTGCCACGGCTCAAGGTAAATAGCGAAAGCGCCAGGAC 2839537 Query 63364 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 63423 | ||||| || ||||| || | ||| | ||| ||||| ||| | || | | ||| |||| Sbjct 2839538 GCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAA 2839597 Query 63424 TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTAC 63483 | | |||||| || | || ||||| |||| |||||| ||| ||||||||||| Sbjct 2839598 TGACACCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGAATA-CGG 2839656 Query 63484 TAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63542 | | | | ||||| || || || ||||| || ||||| | ||||| || | ||| Sbjct 2839657 TGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTG 2839716 Query 63543 TCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63602 || ||||||||||| || || || |||||| | || || || ||||| ||| Sbjct 2839717 TCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGG 2839776 Query 63603 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 63662 || || || || || || | || || || || || || || | || || Sbjct 2839777 CACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGTGAAGAACTTGCTGGAC 2839836 Query 63663 AGTAGATTGTACGTCTCAAT----AGCT-GAGTCTAT-ATCCCATTGATGAATTCCTACT 63716 | || ||||| ||||| || ||| || ||| | |||| |||| || ||| Sbjct 2839837 ATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCA--GATG----CCGACT 2839890 Query 63717 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAG 63776 || |||||||| | ||||||||| ||||| || | |||||| | | || | || | Sbjct 2839891 GCAACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGCAGG 2839950 Query 63777 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 63836 || ||| | |||| || || || || || || | ||| ||||| || ||||| | | Sbjct 2839951 TATGATCTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACA 2840010 Query 63837 ATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAAT 63895 || | || | ||| | ||||| | | | | || ||| || | ||| | ||| Sbjct 2840011 ATGGCAGAATCGAGCTCTTCCTTGTGTCTCATGACGGCATCGTATGT-CTCCTTGGCAAT 2840069 Query 63896 AATCGGAGA----ATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCA 63951 || ||||| |||| ||| | || || ||||||| | | | || || | Sbjct 2840070 CATGGGAGACGCCCTGTT----GTTTCTGGGGTTGACATAGTGGTAGAGGTCGCTAATGA 2840125 Query 63952 CTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTA 64011 | | || | || ||||| | |||||| || || || |||||||| | ||| || | Sbjct 2840126 CCGAAGACCATTGCTTCTTTGTCTGCTTGTGGAGGTTGGAGACGGCTATGCGGGCAGCGA 2840185 Query 64012 GAATGGCATAATCCGGATG 64030 | |||||||| || || || Sbjct 2840186 GGATGGCATAGTCGGGGTG 2840204 >seq9 Length=4851470 Score = 105 bits (116), Expect = 8e-18 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || ||| ||||||||||||||| | || || |||||||| || || || Sbjct 3450685 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGA 3450626 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||||||||| || |||||||| ||||| || || | || |||||| Sbjct 3450625 CCGGGCATGAGGCCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAG 3450566 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT---GT 33480 || || || || || |||||||||| || | || | | || | | |||| Sbjct 3450565 ATACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAGGAGTTCTCATCGCTG 3450506 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTT 33509 |||||||| | ||||| || |||||||| Sbjct 3450505 ATCCACTTCAGGGCCCAGTCAGCCTTCTT 3450477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946935247440