Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq6 403 5e-107 seq9 96.9 9e-15 >seq6 Length=6290098 Score = 403 bits (446), Expect = 5e-107 Identities = 1080/1632 (66%), Gaps = 38/1632 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| || ||| | || ||| | | ||| ||||| || | | | ||| ||||||| Sbjct 2839823 TTCACCCATGCCTCCCCCACACTCTTCAACGCTGGTACCCCTCAGTGCCAGCTGTCTTCA 2839764 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | |||||||| || || || |||||||||| ||||| || |||| Sbjct 2839763 TGCTTCCTCGTCGACATGAAGGAAGACTCTATTGAGGGTATCTACGACACCCTCAAGACC 2839704 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 || || | || ||||||| || || || |||||| | | || || || | ||||||| Sbjct 2839703 TGCGCCATGATCTCCAAGATGGCTGGTGGCATTGGTCTCAACGCTC-ACCGTATTCGTGC 2839645 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || | | || ||| |||||| || |||||| || | |||||||||||| Sbjct 2839644 CACTGG-CTCCTATATTGCCGGCACCAACGGCACCTCGAACGGTGTCATTCCCATGCTTC 2839586 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 |||| ||| |||| ||||| | ||||||||||||||||| ||||| || || | Sbjct 2839585 GTGTCTTTAACAACACTGCTCGCTACGTCGACCAGGGTGGCAACAAGCGTCCTGGCGCTT 2839526 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 | ||||| || || ||||| || ||||| | || ||||| | || | || || | Sbjct 2839525 TCGCTATTTACCTTGAGCCGTGGCACGCCGACGTCTTCGAGTTCATGGACTTGCGCAAGA 2839466 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 || || || ||||| | ||||| ||||| || ||| || || ||| | | || | Sbjct 2839465 ACCATGGCAAGGAGGAGGTCCGTGCCCGTGACCTTTTCCTCGCTCTCTGGATCCCCGATC 2839406 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAATG 364022 || |||||| | || ||| | | | | | ||| | ||| | ||||| | || || Sbjct 2839405 TGTTCATGAAGAGAGTCGAG--AAGAACGCCGACTGGACCCTCATGTGCCCCAATGAGTG 2839348 Query 364023 TCCAGGTCTTTCCGA-TG-TATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAA 364080 || || || | || || ||| || || || | | || | ||||| ||||| || Sbjct 2839347 CCCTGGCCTGGCTGACTGCTAT--GGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAG 2839290 Query 364081 TCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGAT 364140 ||||| |||| ||| ||||| || || |||||||| |||| ||||||| | || Sbjct 2839289 CGCGAGGGCAAGGGTCGCAAGACCATCAAGGCCCAGAAGCTTTGGTATGCCATCCTCGAG 2839230 Query 364141 TCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCC 364200 | |||| ||||| || | |||| ||| | ||||| ||| | |||||||||| | Sbjct 2839229 GCTCAGACCGAGACTGGCAACCCCTTCATGCTTTACAAGGATGCTGCCAACCGCAAGAGC 2839170 Query 364201 AACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATA 364259 |||||| || |||| || || | || |||| |||||| || || ||||| ||||| || Sbjct 2839169 AACCAGAAGAACCTCGGAACTA-TCCGCAGCTCCAACCTTTGCACTGAGATCATTGAGTA 2839111 Query 364260 CACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT 364319 | ||| ||||| ||| || || || ||| | || || | || || || | || || Sbjct 2839110 CTGCGCACCCGATGAGGTCGCTGTCTGCAACTTGGCTTCCCTTGCTCTGCCCACCTTCGT 2839051 Query 364320 ------AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTAC 364373 || |||||| | ||| |||| | ||| | || || || | | | Sbjct 2839050 TGACTACAACGATGGTGTCTACGACTTCCAGAAGCTTCACGAGGTTACTCAGGTCGTTGT 2838991 Query 364374 TTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG----AG 364428 | |||| | ||||| | || || || | || || |||| || || || || Sbjct 2838990 TCGCAACTTGAACAAGATCATTGATGTCAACCACTACCCCGTTCCCGAGGCTCGCAACAG 2838931 Query 364429 CGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTT 364488 | || |||||||| ||||| |||||||||||||| ||||| || ||||| | ||| Sbjct 2838930 C-----AACATGCGTCACCGCCCCATTGGTCTTGGTGTCCAGGGTCTTGCTGATGCTTTC 2838876 Query 364489 ATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTT 364548 | || ||| | || || || ||||| || |||| ||| || ||| ||||||| Sbjct 2838875 CTCGCCCTTCGCATGCCTTTCGAGTCTCCTGAGGCCCGTGATCTCAACAAGAAGATCTTC 2838816 Query 364549 GAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAG 364608 || || || || || || | || || | | |||| || |||| | Sbjct 2838815 GAGACCATCTACCACGCTGCTCTTACCATGTCTGTTCAGCTGGCCAAGGAGGAGGGCACC 2838756 Query 364609 TACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAAT 364668 ||||| || || ||||| |||||| | || ||||| | |||||| || | |||||| Sbjct 2838755 TACTCCACGTACGAGGGCTCCCCTATCTCCCAGGGTATCCTCCAGTACGACATGTGGAAT 2838696 Query 364669 GTCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGG 364727 |||| ||| |||| || ||| | ||||| | || | | | | | ||| |||| || Sbjct 2838695 GTCAAGCCCTCTGACCTCTGGGATTGGGACTCACTGAAGGAGC-AGATCAAGGAGCACGG 2838637 Query 364728 TACTCGCAAC---TCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCT 364784 | |||||| | |||||| || |||||||| || || || ||| | |||||| | Sbjct 2838636 TGTGCGCAACAGTTTGCTCGTT---GCTCCCATGCCTACTGCCTCCACTTCGCAGATCTT 2838580 Query 364785 CGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTC 364844 || ||||||||||||||||| || | || ||| | || ||| || |||||| | Sbjct 2838579 GGGCAACAACGAGTGCTTCGAGCCCTACACCTCCAACATCTACCAACGTCGTGTTCTTGC 2838520 Query 364845 CGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTG 364904 ||| || || | ||| || || | | | |||||||| |||| || ||||| Sbjct 2838519 CGGCGAGTTCCAGGTTGTCAACCCCTGGTTGTTGAAGGATCTCGTCGACATGGGCCTGTG 2838460 Query 364905 GGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGG 364964 | || |||||||||| ||||||||||| || |||||| | |||||||| || Sbjct 2838459 GTCCGATGCCATGAAGAACCGTATCATCGCCGAGAACGGTTCTATCCAGAACATCCCCAA 2838400 Query 364965 ATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCT 365024 |||| | || | ||| || | ||||| ||||| ||||| || ||| ||| || | Sbjct 2838399 CATTCCCGCTGAGGTCAAGGCTCTGTACAAGACCGTTTGGGAGATCTCCCAGCGCACCGT 2838340 Query 365025 CATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATT 365084 || | ||||| ||||| || ||||| || ||| ||| |||||| ||||| | Sbjct 2838339 TGTTCAGATGGCTGCCGACCGTGGTGCCTTCATCGACCAGTCCCAGTCCCTTAACATCCA 2838280 Query 365085 CATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGG 365144 ||||| | || || | |||| | || ||||| ||| ||| ||||| || Sbjct 2838279 CATGAAGGACCCGACAATGGGCAAGATCACCAGTATGCACTTCGCCGGCTGGAAGCTTGG 2838220 Query 365145 TCTTAAGACAGG 365156 ||| ||||| || Sbjct 2838219 TCTCAAGACGGG 2838208 >seq9 Length=4851470 Score = 96.9 bits (106), Expect = 9e-15 Identities = 148/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGA--ACGT-TCATTCGCGGAACGT 22494 || ||||| || ||||| ||||| ||||| | | |||| || || ||||| | ||| Sbjct 3450477 AAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAGAACTCCTCCTTCGCCCAGCGT 3450536 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554 || |||| ||||| | ||||| || || ||||| || || ||| | |||||| Sbjct 3450537 CTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTT 3450596 Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614 ||||| || || |||| | ||||| ||||| || || || || ||| | || ||| Sbjct 3450597 TGGCTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCCCGT 3450656 Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTG 22643 || |||||||| || ||||| ||||| || Sbjct 3450657 GACGAGGGTCTGCACACCGACTTTGCCTG 3450685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353032226588