Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq6 403 5e-107
seq9 96.9 9e-15
>seq6
Length=6290098
Score = 403 bits (446), Expect = 5e-107
Identities = 1080/1632 (66%), Gaps = 38/1632 (2%)
Strand=Plus/Minus
Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606
||||| || ||| | || ||| | | ||| ||||| || | | | ||| |||||||
Sbjct 2839823 TTCACCCATGCCTCCCCCACACTCTTCAACGCTGGTACCCCTCAGTGCCAGCTGTCTTCA 2839764
Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666
||||| || | | |||||||| || || || |||||||||| ||||| || ||||
Sbjct 2839763 TGCTTCCTCGTCGACATGAAGGAAGACTCTATTGAGGGTATCTACGACACCCTCAAGACC 2839704
Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725
|| || | || ||||||| || || || |||||| | | || || || | |||||||
Sbjct 2839703 TGCGCCATGATCTCCAAGATGGCTGGTGGCATTGGTCTCAACGCTC-ACCGTATTCGTGC 2839645
Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784
|| | | || ||| |||||| || |||||| || | ||||||||||||
Sbjct 2839644 CACTGG-CTCCTATATTGCCGGCACCAACGGCACCTCGAACGGTGTCATTCCCATGCTTC 2839586
Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844
|||| ||| |||| ||||| | ||||||||||||||||| ||||| || || |
Sbjct 2839585 GTGTCTTTAACAACACTGCTCGCTACGTCGACCAGGGTGGCAACAAGCGTCCTGGCGCTT 2839526
Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904
| ||||| || || ||||| || ||||| | || ||||| | || | || || |
Sbjct 2839525 TCGCTATTTACCTTGAGCCGTGGCACGCCGACGTCTTCGAGTTCATGGACTTGCGCAAGA 2839466
Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964
|| || || ||||| | ||||| ||||| || ||| || || ||| | | || |
Sbjct 2839465 ACCATGGCAAGGAGGAGGTCCGTGCCCGTGACCTTTTCCTCGCTCTCTGGATCCCCGATC 2839406
Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAATG 364022
|| |||||| | || ||| | | | | | ||| | ||| | ||||| | || ||
Sbjct 2839405 TGTTCATGAAGAGAGTCGAG--AAGAACGCCGACTGGACCCTCATGTGCCCCAATGAGTG 2839348
Query 364023 TCCAGGTCTTTCCGA-TG-TATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAA 364080
|| || || | || || ||| || || || | | || | ||||| ||||| ||
Sbjct 2839347 CCCTGGCCTGGCTGACTGCTAT--GGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAG 2839290
Query 364081 TCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGAT 364140
||||| |||| ||| ||||| || || |||||||| |||| ||||||| | ||
Sbjct 2839289 CGCGAGGGCAAGGGTCGCAAGACCATCAAGGCCCAGAAGCTTTGGTATGCCATCCTCGAG 2839230
Query 364141 TCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCC 364200
| |||| ||||| || | |||| ||| | ||||| ||| | |||||||||| |
Sbjct 2839229 GCTCAGACCGAGACTGGCAACCCCTTCATGCTTTACAAGGATGCTGCCAACCGCAAGAGC 2839170
Query 364201 AACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATA 364259
|||||| || |||| || || | || |||| |||||| || || ||||| ||||| ||
Sbjct 2839169 AACCAGAAGAACCTCGGAACTA-TCCGCAGCTCCAACCTTTGCACTGAGATCATTGAGTA 2839111
Query 364260 CACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT 364319
| ||| ||||| ||| || || || ||| | || || | || || || | || ||
Sbjct 2839110 CTGCGCACCCGATGAGGTCGCTGTCTGCAACTTGGCTTCCCTTGCTCTGCCCACCTTCGT 2839051
Query 364320 ------AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTAC 364373
|| |||||| | ||| |||| | ||| | || || || | | |
Sbjct 2839050 TGACTACAACGATGGTGTCTACGACTTCCAGAAGCTTCACGAGGTTACTCAGGTCGTTGT 2838991
Query 364374 TTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG----AG 364428
| |||| | ||||| | || || || | || || |||| || || || ||
Sbjct 2838990 TCGCAACTTGAACAAGATCATTGATGTCAACCACTACCCCGTTCCCGAGGCTCGCAACAG 2838931
Query 364429 CGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTT 364488
| || |||||||| ||||| |||||||||||||| ||||| || ||||| | |||
Sbjct 2838930 C-----AACATGCGTCACCGCCCCATTGGTCTTGGTGTCCAGGGTCTTGCTGATGCTTTC 2838876
Query 364489 ATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTT 364548
| || ||| | || || || ||||| || |||| ||| || ||| |||||||
Sbjct 2838875 CTCGCCCTTCGCATGCCTTTCGAGTCTCCTGAGGCCCGTGATCTCAACAAGAAGATCTTC 2838816
Query 364549 GAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAG 364608
|| || || || || || | || || | | |||| || |||| |
Sbjct 2838815 GAGACCATCTACCACGCTGCTCTTACCATGTCTGTTCAGCTGGCCAAGGAGGAGGGCACC 2838756
Query 364609 TACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAAT 364668
||||| || || ||||| |||||| | || ||||| | |||||| || | ||||||
Sbjct 2838755 TACTCCACGTACGAGGGCTCCCCTATCTCCCAGGGTATCCTCCAGTACGACATGTGGAAT 2838696
Query 364669 GTCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGG 364727
|||| ||| |||| || ||| | ||||| | || | | | | | ||| |||| ||
Sbjct 2838695 GTCAAGCCCTCTGACCTCTGGGATTGGGACTCACTGAAGGAGC-AGATCAAGGAGCACGG 2838637
Query 364728 TACTCGCAAC---TCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCT 364784
| |||||| | |||||| || |||||||| || || || ||| | |||||| |
Sbjct 2838636 TGTGCGCAACAGTTTGCTCGTT---GCTCCCATGCCTACTGCCTCCACTTCGCAGATCTT 2838580
Query 364785 CGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTC 364844
|| ||||||||||||||||| || | || ||| | || ||| || |||||| |
Sbjct 2838579 GGGCAACAACGAGTGCTTCGAGCCCTACACCTCCAACATCTACCAACGTCGTGTTCTTGC 2838520
Query 364845 CGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTG 364904
||| || || | ||| || || | | | |||||||| |||| || |||||
Sbjct 2838519 CGGCGAGTTCCAGGTTGTCAACCCCTGGTTGTTGAAGGATCTCGTCGACATGGGCCTGTG 2838460
Query 364905 GGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGG 364964
| || |||||||||| ||||||||||| || |||||| | |||||||| ||
Sbjct 2838459 GTCCGATGCCATGAAGAACCGTATCATCGCCGAGAACGGTTCTATCCAGAACATCCCCAA 2838400
Query 364965 ATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCT 365024
|||| | || | ||| || | ||||| ||||| ||||| || ||| ||| || |
Sbjct 2838399 CATTCCCGCTGAGGTCAAGGCTCTGTACAAGACCGTTTGGGAGATCTCCCAGCGCACCGT 2838340
Query 365025 CATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATT 365084
|| | ||||| ||||| || ||||| || ||| ||| |||||| ||||| |
Sbjct 2838339 TGTTCAGATGGCTGCCGACCGTGGTGCCTTCATCGACCAGTCCCAGTCCCTTAACATCCA 2838280
Query 365085 CATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGG 365144
||||| | || || | |||| | || ||||| ||| ||| ||||| ||
Sbjct 2838279 CATGAAGGACCCGACAATGGGCAAGATCACCAGTATGCACTTCGCCGGCTGGAAGCTTGG 2838220
Query 365145 TCTTAAGACAGG 365156
||| ||||| ||
Sbjct 2838219 TCTCAAGACGGG 2838208
>seq9
Length=4851470
Score = 96.9 bits (106), Expect = 9e-15
Identities = 148/209 (71%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGA--ACGT-TCATTCGCGGAACGT 22494
|| ||||| || ||||| ||||| ||||| | | |||| || || ||||| | |||
Sbjct 3450477 AAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAGAACTCCTCCTTCGCCCAGCGT 3450536
Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554
|| |||| ||||| | ||||| || || ||||| || || ||| | ||||||
Sbjct 3450537 CTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTT 3450596
Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614
||||| || || |||| | ||||| ||||| || || || || ||| | || |||
Sbjct 3450597 TGGCTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCCCGT 3450656
Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTG 22643
|| |||||||| || ||||| ||||| ||
Sbjct 3450657 GACGAGGGTCTGCACACCGACTTTGCCTG 3450685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303353032226588
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |