Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq9 132 5e-26
seq6 125 7e-24
seq10 116 3e-21
seq14 109 5e-19
>seq9
Length=4851470
Score = 132 bits (146), Expect = 5e-26
Identities = 335/501 (67%), Gaps = 19/501 (4%)
Strand=Plus/Plus
Query 46096 CGCAAGAAAACCGACTGGGCGATGAAGTGGATCAAC-AGCAGCACCGCGACTTTCGCCGA 46154
|||||||| | |||||||| |||||||||||| | | || | | | | |||||| |
Sbjct 3450474 CGCAAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAG-AACTCCTCCTTCGCCCA 3450532
Query 46155 GCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCAT 46214
|||| |||| |||||||| ||| ||||| |||| || || ||||||| ||||
Sbjct 3450533 GCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCAT 3450592
Query 46215 CTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATC 46274
||||| |||| | ||| |||||||||| ||||| || ||||||||| || ||
Sbjct 3450593 CTTTTGGCTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTC 3450652
Query 46275 GCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGA 46334
|| |||||||| ||||| || |||||||| || |||| | |||| |||
Sbjct 3450653 CCGTGACGAGGGTCTGCACACCGACTTTGCCTGCCTCTTGT-----ACTC----TCACCT 3450703
Query 46335 CAAGCTTGCGCCCGACA--CCGTGC--TGAG--CATGTTCAAGGAGGCGGTGGCCATTGA 46388
||||| ||| ||| | | | |||| ||| || || || || |||||
Sbjct 3450704 CAAGCACCGCCCCAACAAGCAGGTCATTGAGGACATCATCGTTGATGCCGTCAAGATTGA 3450763
Query 46389 GAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAAT 46448
| ||||||| | || | || |||||| || || || ||||||||| | | | ||
Sbjct 3450764 GCAGGAGTTCCTCACTGAGGCTCTGCCCTGCGCTCTTCTCGGCATGAACTCCAACTTGAT 3450823
Query 46449 GTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCA 46508
| | ||||| ||||| || || ||||| || || || ||| | | |||
Sbjct 3450824 GAAGCAGTACATTGAGTTCGTTGCCGACCGCCTCCTGGTCGCTCTTGGCAACGACAAG-G 3450882
Query 46509 TTTTCACG-CGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTA 46567
| | || | | ||| || || || || ||| | ||||||||||| | ||||| || |
Sbjct 3450883 TCTACAAGTCCTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCA 3450942
Query 46568 ATTTTTTCGAAAAGCGCGTCG 46588
| || || || ||||| ||||
Sbjct 3450943 ACTTCTTTGAGAAGCGTGTCG 3450963
>seq6
Length=6290098
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| |||||| || | ||| | || |||||||| |||||||||||||| |
Sbjct 607609 CCACCACGCAGACGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGAC 607550
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || ||||| |||||||| || ||| |||| || ||||||||||| |||||
Sbjct 607549 AAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 607490
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || || || ||| ||| ||||| | || | || || | || || |
Sbjct 607489 ATGCCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAACC 607430
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| |||| || || || || || || || ||||||||||||||
Sbjct 607429 TCGAGCGTAATCGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 607383
Score = 122 bits (134), Expect = 8e-23
Identities = 157/217 (72%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||| | ||| || || ||||| | || |||||||| ||||||||||| ||| |
Sbjct 607381 CCACCGCGAAGACGAAGAACCAAATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAC 607322
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| || |||||||| || |||| |||||||||||||| || |||
Sbjct 607321 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGG 607262
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || || || || ||| ||||| | || | ||||| | |||||||
Sbjct 607261 ATGCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACC 607202
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
|| | ||| | ||| || || || || || || ||||
Sbjct 607201 TCAAGGGTGATGGTCTTGCCAGTGAGCGTCTTGACGA 607165
Score = 122 bits (134), Expect = 8e-23
Identities = 705/1115 (63%), Gaps = 39/1115 (3%)
Strand=Plus/Plus
Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117
||||| ||||| ||||||||||| | |||||||| || | ||| || ||| ||||
Sbjct 2838499 TTGACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTAGGGC 2838558
Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177
|| || ||||||| ||||||| ||| || | || | || || |||||| || ||
Sbjct 2838559 TCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACG 2838618
Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237
| || ||||||| ||||||| |||||| | ||||| || | ||||||||||
Sbjct 2838619 AGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGTGAGTCCCAATCCCAG 2838678
Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297
|| || ||| | || | ||||||||||||||| | || |||| | | ||| |
Sbjct 2838679 AGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACCCTGGGAGATAGGGGAG 2838738
Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCT--CCAGAG 145355
|| | | | ||| ||||| ||||| |||| ||| | | ||||
Sbjct 2838739 CCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCT--GAACAGACATGGTAAGAG 2838796
Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCA-TCGCTTCATCGCTCTCG 145414
| || || || |||||| || | | ||||||| | || || ||| ||||
Sbjct 2838797 CAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAG-ATCACGGGCCTCAGGAGACTCG 2838855
Query 145415 TACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGC 145474
| |||||||| || | |||||||| || || ||||| | || | || |||||
Sbjct 2838856 AAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAGACCAATGGGG 2838915
Query 145475 CGATGTTTCATGTTGCTCATCCTCGCCGACTCG---ATAGGATATCGATTACGGTCGATA 145531
|| || ||||||||| | | || |||| | || || | || || ||
Sbjct 2838916 CGGTGACGCATGTTGCTGTTGCGAGC---CTCGGGAACGGGGTAGTGGTTGACATCAATG 2838972
Query 145532 ATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAAC 145591
|| || |||||||| || || || |||| |||| | | | ||| | ||||| |
Sbjct 2838973 ATCTTGTTCAAGTTGCGAACAACGACCTGAGTAACCTCGTGAAGCTTCTGGAAGTCGTAG 2839032
Query 145592 CGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCC 145651
| | |||| | | || || | | || | || ||||| || || || ||
Sbjct 2839033 ACACCATCGTTGTAGTCAACGAAGGTGGGCAGAGCAAGGGAAGCCAAGTTGCAGACAGCG 2839092
Query 145652 GTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTT 145711
||| |||| ||| ||| | | |||||| | ||| | ||| | ||| |||
Sbjct 2839093 ACCTCATCGGGTGCGCAGTACTCAATGATCTCAGTGCAAAGGTTGGAGCTGCGGATAGTT 2839152
Query 145712 CCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCG 145771
|| || || | ||| || || || | |||| || |||||||| |||||| | || |
Sbjct 2839153 CCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAAAGCATGAAGGGGTTG 2839212
Query 145772 CCAGTCTCCACCTGCGTCTCCACGAT---AAAACGGTGCAAGTCCTGCGCACGCACCTGC 145828
|||||||| ||| | ||| | ||| | | | || | ||| || | ||
Sbjct 2839213 CCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAGC---TTCTGGGC-----CTTGA 2839264
Query 145829 TGCTGGTAGCG------GCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAA 145882
|| | | ||| |||||| ||||| ||| ||| | |||| ||| |
Sbjct 2839265 TGGT-CTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCG 2839323
Query 145883 CCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTG 145942
|| ||||| || | |||||| || |||| ||||| ||||| || | ||| || ||||
Sbjct 2839324 CCATAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTC 2839383
Query 145943 GCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCT 146002
| ||| | || ||| |||| ||| || | ||| || ||| | | ||| || ||
Sbjct 2839384 TTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCA 2839443
Query 146003 TTGCAATCCTCAGCACCCATGTTTC--GCTTCAAAT-TAAGCACACTATAGATGTCCGCG 146059
| ||||| ||||| ||| || ||| | | | || | | ||| ||| |||
Sbjct 2839444 CGGACCTCCTC-CTTGCCATGGTTCTTGC-GCAAGTCCATGAACTCGA-AGACGTCGGCG 2839500
Query 146060 TGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACG 146116
|||||||| |||| || | |||| || || || |||||||||||||| |||
Sbjct 2839501 TGCCACGGCTCAAGGTAAATAGCGAAAGCGCCAGGACGCTTGTTGCCACCCTGGTCGACG 2839560
Query 146117 TGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151
| || | ||||||||||||| || | ||||||
Sbjct 2839561 TAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGG 2839595
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
||| || || | ||| || || | ||| | ||| || ||||| || ||||||||||||||
Sbjct 607838 GCCGCCACGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCGCT 607779
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| ||||| || || |||||||| || ||| |||| | |||||||||||| || ||
Sbjct 607778 CAGAGTGCGACCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCAGGGGG 607719
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|| || || ||||| ||| || ||| | | || | || || | |||||||
Sbjct 607718 AATACCCTCCTTGTCCTGGATCTTGGACTTCACATTATCAATCGTGTCAGATGACTCGAC 607659
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | |||| || || || || || || || ||||| ||||||||
Sbjct 607658 TTCCAATGTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 607611
Score = 100 bits (110), Expect = 3e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | || || || || || | || |||||||| || |||||||| |||
Sbjct 607095 CCACCACGAAGGCGGAGAACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 607036
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| |||||| ||||||||||| ||| | || | ||||||||| || || ||
Sbjct 607035 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGA 606976
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||| | | || | ||||||| ||||||||
Sbjct 606975 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTATCAATGGTATCGGAGGACTCGACC 606916
Query 131188 TCGACGGTAACGGTTTTACCGGT 131210
|||| || | ||| || |||||
Sbjct 606915 TCGAGAGTGATGGTCTTGCCGGT 606893
>seq10
Length=4416304
Score = 116 bits (128), Expect = 3e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| ||||| || | || | ||| |||||||| || |||||||| |||
Sbjct 3556406 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3556465
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| |||||| |||||||| || ||| |||| | ||||||||||| || ||
Sbjct 3556466 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 3556525
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | || |||| ||||| |
Sbjct 3556526 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 3556585
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236
|| | ||| | || || || || || || || ||||| ||||||||||
Sbjct 3556586 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGA 3556634
>seq14
Length=3529981
Score = 109 bits (120), Expect = 5e-19
Identities = 138/189 (73%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104
|||| || |||||||| ||| | |||||| ||||| ||||||||||| ||| |||
Sbjct 714228 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 714169
Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164
| | ||||||||||| || ||||| || || ||||| ||| || ||||| | |
Sbjct 714168 TCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 714109
Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
| | || |||| |||||||| || | ||||| ||| ||||| || || || || ||||
Sbjct 714108 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 714049
Query 131225 AAATCTGCA 131233
|| |||||
Sbjct 714048 AA--CTGCA 714042
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472012599394560
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