Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6 141 1e-28 seq9 96.9 4e-15 >seq6 Length=6290098 Score = 141 bits (156), Expect = 1e-28 Identities = 458/704 (65%), Gaps = 14/704 (2%) Strand=Plus/Plus Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077 |||| ||||| || |||| || ||||| | | ||| || ||| | || |||| | Sbjct 2839337 CCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCT 2839396 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137 |||| || ||||| || ||||| ||||| | || || || | || | ||||| | Sbjct 2839397 TCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCT 2839456 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 | || ||||| | || | |||| | | | || | |||||||| || | || Sbjct 2839457 TGCCATGGTTCTTGCGCAAGTCCATGAACTCGAAGACGTCGGCGTGCCACGGCTCAAGGT 2839516 Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257 | || || | | | ||||| || ||||| || ||||| || | ||| | ||| ||||| | Sbjct 2839517 AAATAGCGAAAGCGCCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGT 2839576 Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317 || | || | | ||| ||||| | ||| || || || || ||||| || | |||||| Sbjct 2839577 TAAAGACACGAAGCATGGGAATGACACCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGG 2839636 Query 63318 TTCCACTGGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATT 63376 ||| ||||||||||| | | | | ||||| || || || ||||| || ||||| Sbjct 2839637 AGCCAGTGGCACGAATA-CGGTGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATC 2839695 Query 63377 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 63436 | ||||| || | || || ||||| ||||| ||| || ||| |||||| | Sbjct 2839696 ATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGACG 2839755 Query 63437 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63496 || || || ||||| ||| || || || || || || | || || || || Sbjct 2839756 AGGAAGCATGAAGACAGCTGGCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCA 2839815 Query 63497 TGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCT-GAGTCTAT-A 63550 || || || | || || | || ||||| ||||| || ||| || ||| | Sbjct 2839816 TGGGTGAAGAACTTGCTGGACATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCA 2839875 Query 63551 TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATC 63610 |||| |||| || ||||| |||||||| | ||||||||| ||||| || | ||| Sbjct 2839876 CCCCA--GATG----CCGACTGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCAATC 2839929 Query 63611 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63670 ||| | | || | || ||| ||| | |||| || || || || || || | ||| Sbjct 2839930 TTGCCATCAAGCTTGAGCAGGTATGATCTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAG 2839989 Query 63671 GAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714 ||||| || ||||| | ||| | || | ||| | ||||| Sbjct 2839990 TTGAAGTCGCGGTCGTAGACAATGGCAGAATCGAGCTCTTCCTT 2840033 >seq9 Length=4851470 Score = 96.9 bits (106), Expect = 4e-15 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || ||| ||| ||||||||||| | || | |||||||| || || || Sbjct 3450685 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGA 3450626 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 |||||||| ||||||||||| || |||||||| ||||| ||||| | || ||||| Sbjct 3450625 CCGGGCATGAGGCCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAG 3450566 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT---GT 32837 || || || || || |||||||||| || | || | | || | | |||| Sbjct 3450565 ATACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAGGAGTTCTCATCGCTG 3450506 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTT 32866 |||||||| | ||||| || |||||||| Sbjct 3450505 ATCCACTTCAGGGCCCAGTCAGCCTTCTT 3450477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631730706400