Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq9 114 1e-20 >seq9 Length=4851470 Score = 114 bits (126), Expect = 1e-20 Identities = 198/287 (69%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || ||||| | || || || | ||||| |||| |||||||| || ||| Sbjct 3450362 ATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGG 3450303 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || |||||||| || | ||| || | || ||| || || || || | ||| || || Sbjct 3450302 AAGCCGTAGAAGCAGCGAGCCTCAGGGACCTGGACCTCGCCGGAGAAGCGCTCGACCAGG 3450243 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || |||||||| ||||| || ||||| || || || || | || || || || | Sbjct 3450242 TTCTCATTGACGATACCGTCCGATGCGGCGAAGAAGGCAAGAATGTGAGAGATGAAGTAC 3450183 Query 93542 TTCTCATCATCTTTAAGC---TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598 ||||||||||| || | | || | ||| ||| ||||| || || ||||| | || Sbjct 3450182 TTCTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCAATCTCC 3450123 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 ||| | ||||| || || || || || || |||||||| | ||| || Sbjct 3450122 TCGGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCCAGAT 3450076 Score = 95.1 bits (104), Expect = 1e-14 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||||| | ||| ||||||||||| || | ||| ||||| || || || | ||| ||| Sbjct 3450695 GTACAAGAGGCAGGCAAAGTCGGTGTGCAGACCCTCGTCACGGGAGATGAGCTCGTTGGA 3450636 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 ||| || | ||| || | || || || |||||||||||||| || || |||||| ||| Sbjct 3450635 GAAGGTCAGACCGGGCATGAGGCCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACC 3450576 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 || || ||||| || || || ||||| || || | ||| | ||| || | ||| Sbjct 3450575 GCTGAAGAAGATACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAA---GGAGGA 3450519 Query 93262 ATT---ACTGCTGATCCATTTTAAAGCCCAATCGGCtttttt 93300 || | ||||||||| || | ||||| || || || || Sbjct 3450518 GTTCTCATCGCTGATCCACTTCAGGGCCCAGTCAGCCTTCTT 3450477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860563334160