Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq6 123 5e-23
seq14 109 1e-18
seq9 109 1e-18
>seq6
Length=6290098
Score = 123 bits (136), Expect = 5e-23
Identities = 449/696 (65%), Gaps = 9/696 (1%)
Strand=Plus/Plus
Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174
||| | ||| |||| ||||||||||| || ||||| | | || || || | ||
Sbjct 2838294 CTGGGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGAACAACGGTGCGCTGGGA 2838353
Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234
||||||||| |||||||||| |||||||| |||| ||||| | |||||
Sbjct 2838354 GATCTCCCAAACGGTCTTGTACAGAGCCTTGACCTCAGCGGGAATGTTGGGGATGTTCTG 2838413
Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAG 293293
|||||| || | ||| || || |||||||||| | |||||||| || |||| |
Sbjct 2838414 GATAGAACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATG-T 2838472
Query 293294 CAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGAC 293353
| | ||| || | | | | ||||||||| ||||||| || || ||| ||||
Sbjct 2838473 CGACGAGATCCTTCAACAACCAGGGGTTGACAACCTGGAACTCGCCGGCAAGAACACGAC 2838532
Query 293354 GGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAG 293413
| ||| ||||| || ||| ||| ||| ||| || | ||||| | ||
Sbjct 2838533 GTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAG 2838592
Query 293414 TAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACC---CTTCTTGACAC 293470
| || || |||||||| ||||| || | ||| | |||||| || |||||
Sbjct 2838593 TGGAGGCAGTAGGCATGGGAGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCT 2838652
Query 293471 GCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGA-GGTGTAACACCCCAGAGATGATA 293528
|| | || |||| | |||||| ||| || || | ||| ||| | | ||
Sbjct 2838653 GCTCCTTCAGTGAGTCCCAATCCCAGAG--GTCAGAGGGCTTGACATTCCACATGTCGTA 2838710
Query 293529 CTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCATC 293588
||| | |||||||| | | ||| || ||||| | |||| | || ||| | ||| |
Sbjct 2838711 CTGGAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTT 2838770
Query 293589 AGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGTT 293648
| |||| ||| || |||||| ||| ||| ||||||||||| |||
Sbjct 2838771 GGCCAGCTGAACAGACATGGTAAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTT 2838830
Query 293649 GAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCAG 293708
||| | || |||| ||| || || ||||| || || ||| |||| ||
Sbjct 2838831 GAGATCACGGGCCTCAGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAG 2838890
Query 293709 ACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAAC 293768
|||||| ||||| | ||||| |||||| ||||| ||||||| | |||||||||||
Sbjct 2838891 ACCCTGGACACCAAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCGGGAAC 2838950
Query 293769 CGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804
| || | ||||||||| || ||| || |||
Sbjct 2838951 GGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTT 2838986
>seq14
Length=3529981
Score = 109 bits (120), Expect = 1e-18
Identities = 159/222 (72%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|||||||| || || |||| ||||| ||||| || |||| |||||||| || |||
Sbjct 2706105 GGTGAGGACCTTTGCAACTGCACCTTCTCTCTCGCCTACGGTGCCAAGATTCTTCTCAAC 2706046
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|||| |||| | ||||||||||| | || || ||||| ||||||||| || |
Sbjct 2706045 CAGACCCACCTCCGCCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 2705986
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| ||||| ||||| ||||| |||| ||| | | ||| ||||| | |||
Sbjct 2705985 GGAAAGTCTACTCTCATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 2705927
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
|| ||||| | ||| || | || ||||||||| | |||||
Sbjct 2705926 GTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTGGACTC 2705885
Score = 96.9 bits (106), Expect = 7e-15
Identities = 96/122 (79%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760
||||||||||||| || ||||| || || |||||| ||||| | ||| | | ||
Sbjct 2704703 CTCACTCTCGCATGCGTGGTCTGTCCGGTGGCCAGCGTGTCAAGGTCGTCCTTGCTGCCT 2704644
Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820
||||| ||||||| ||| ||| ||||||| || ||||||||||||||||| || |||||
Sbjct 2704643 GCTCT-TGGCAACGCCCCCACTTGATCGTCCTTGACGAGCCTACCAACTACCTTGACCGT 2704585
Query 280821 GA 280822
||
Sbjct 2704584 GA 2704583
>seq9
Length=4851470
Score = 109 bits (120), Expect = 1e-18
Identities = 265/397 (67%), Gaps = 7/397 (2%)
Strand=Plus/Minus
Query 251542 TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCC 251601
|| || |||| ||||| || ||||| || | |||||| | || ||||| ||||
Sbjct 3450973 TGGTAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCC 3450914
Query 251602 ATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG 251661
||||||||||||||||| | || ||||| |||| | |||||| || || | || |
Sbjct 3450913 ATGAAGTCGAAGGGGTTGGAGGACTTGTAGACCTTGTCGTTGCCAAGAGCGACCAGGAGG 3450854
Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA 251721
||||| || || ||||| | ||||| ||||| | ||||||||||| | | |
Sbjct 3450853 CGGTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCG 3450794
Query 251722 CAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCC 251781
|| || | |||||| || ||| |||| || | || || || | | || ||
Sbjct 3450793 CAGGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGTCC 3450734
Query 251782 T---TCACCTGTGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAAC 251838
| | ||| ||| | || || || || | ||||||| ||| | ||||
Sbjct 3450733 TCAATGACC--TGCTTGTTGGGGC-GGTGCTTGAGGTGAGAGTACAAGAGGCAGGCAAAG 3450677
Query 251839 TGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATC 251898
| ||||||||||||||| || ||||| ||||||||| | ||| || |||||
Sbjct 3450676 TCGGTGTGCAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATG 3450617
Query 251899 ACCCCACGGTTCCTGAGCCAGAAGATTG-CGCAAAAG 251934
| ||||| ||| ||||||| ||||| | |||||||
Sbjct 3450616 AGGCCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAG 3450580
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836352248594
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |