Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq6 123 5e-23 seq14 109 1e-18 seq9 109 1e-18 >seq6 Length=6290098 Score = 123 bits (136), Expect = 5e-23 Identities = 449/696 (65%), Gaps = 9/696 (1%) Strand=Plus/Plus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||| | ||| |||| ||||||||||| || ||||| | | || || || | || Sbjct 2838294 CTGGGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGAACAACGGTGCGCTGGGA 2838353 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 ||||||||| |||||||||| |||||||| |||| ||||| | ||||| Sbjct 2838354 GATCTCCCAAACGGTCTTGTACAGAGCCTTGACCTCAGCGGGAATGTTGGGGATGTTCTG 2838413 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAG 293293 |||||| || | ||| || || |||||||||| | |||||||| || |||| | Sbjct 2838414 GATAGAACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATG-T 2838472 Query 293294 CAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGAC 293353 | | ||| || | | | | ||||||||| ||||||| || || ||| |||| Sbjct 2838473 CGACGAGATCCTTCAACAACCAGGGGTTGACAACCTGGAACTCGCCGGCAAGAACACGAC 2838532 Query 293354 GGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAG 293413 | ||| ||||| || ||| ||| ||| ||| || | ||||| | || Sbjct 2838533 GTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAG 2838592 Query 293414 TAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACC---CTTCTTGACAC 293470 | || || |||||||| ||||| || | ||| | |||||| || ||||| Sbjct 2838593 TGGAGGCAGTAGGCATGGGAGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCT 2838652 Query 293471 GCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGA-GGTGTAACACCCCAGAGATGATA 293528 || | || |||| | |||||| ||| || || | ||| ||| | | || Sbjct 2838653 GCTCCTTCAGTGAGTCCCAATCCCAGAG--GTCAGAGGGCTTGACATTCCACATGTCGTA 2838710 Query 293529 CTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCATC 293588 ||| | |||||||| | | ||| || ||||| | |||| | || ||| | ||| | Sbjct 2838711 CTGGAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTT 2838770 Query 293589 AGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGTT 293648 | |||| ||| || |||||| ||| ||| ||||||||||| ||| Sbjct 2838771 GGCCAGCTGAACAGACATGGTAAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTT 2838830 Query 293649 GAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCAG 293708 ||| | || |||| ||| || || ||||| || || ||| |||| || Sbjct 2838831 GAGATCACGGGCCTCAGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAG 2838890 Query 293709 ACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAAC 293768 |||||| ||||| | ||||| |||||| ||||| ||||||| | ||||||||||| Sbjct 2838891 ACCCTGGACACCAAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCGGGAAC 2838950 Query 293769 CGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804 | || | ||||||||| || ||| || ||| Sbjct 2838951 GGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTT 2838986 >seq14 Length=3529981 Score = 109 bits (120), Expect = 1e-18 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| || || |||| ||||| ||||| || |||| |||||||| || ||| Sbjct 2706105 GGTGAGGACCTTTGCAACTGCACCTTCTCTCTCGCCTACGGTGCCAAGATTCTTCTCAAC 2706046 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| |||| | ||||||||||| | || || ||||| ||||||||| || | Sbjct 2706045 CAGACCCACCTCCGCCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 2705986 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||||| ||||| ||||| |||| ||| | | ||| ||||| | ||| Sbjct 2705985 GGAAAGTCTACTCTCATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 2705927 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || ||||| | ||| || | || ||||||||| | ||||| Sbjct 2705926 GTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTGGACTC 2705885 Score = 96.9 bits (106), Expect = 7e-15 Identities = 96/122 (79%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||||||||| || ||||| || || |||||| ||||| | ||| | | || Sbjct 2704703 CTCACTCTCGCATGCGTGGTCTGTCCGGTGGCCAGCGTGTCAAGGTCGTCCTTGCTGCCT 2704644 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 ||||| ||||||| ||| ||| ||||||| || ||||||||||||||||| || ||||| Sbjct 2704643 GCTCT-TGGCAACGCCCCCACTTGATCGTCCTTGACGAGCCTACCAACTACCTTGACCGT 2704585 Query 280821 GA 280822 || Sbjct 2704584 GA 2704583 >seq9 Length=4851470 Score = 109 bits (120), Expect = 1e-18 Identities = 265/397 (67%), Gaps = 7/397 (2%) Strand=Plus/Minus Query 251542 TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCC 251601 || || |||| ||||| || ||||| || | |||||| | || ||||| |||| Sbjct 3450973 TGGTAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCC 3450914 Query 251602 ATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG 251661 ||||||||||||||||| | || ||||| |||| | |||||| || || | || | Sbjct 3450913 ATGAAGTCGAAGGGGTTGGAGGACTTGTAGACCTTGTCGTTGCCAAGAGCGACCAGGAGG 3450854 Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA 251721 ||||| || || ||||| | ||||| ||||| | ||||||||||| | | | Sbjct 3450853 CGGTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCG 3450794 Query 251722 CAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCC 251781 || || | |||||| || ||| |||| || | || || || | | || || Sbjct 3450793 CAGGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGTCC 3450734 Query 251782 T---TCACCTGTGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAAC 251838 | | ||| ||| | || || || || | ||||||| ||| | |||| Sbjct 3450733 TCAATGACC--TGCTTGTTGGGGC-GGTGCTTGAGGTGAGAGTACAAGAGGCAGGCAAAG 3450677 Query 251839 TGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATC 251898 | ||||||||||||||| || ||||| ||||||||| | ||| || ||||| Sbjct 3450676 TCGGTGTGCAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATG 3450617 Query 251899 ACCCCACGGTTCCTGAGCCAGAAGATTG-CGCAAAAG 251934 | ||||| ||| ||||||| ||||| | ||||||| Sbjct 3450616 AGGCCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAG 3450580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836352248594