Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq10 185 2e-41
seq6 149 1e-30
seq14 129 1e-24
seq19 109 1e-18
seq12 89.7 9e-13
>seq10
Length=4416304
Score = 185 bits (204), Expect = 2e-41
Identities = 179/230 (78%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||||| |||| ||| || |||||||| || |||||||| || ||||||
Sbjct 3556406 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3556465
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| |||||||| || || | || |||||||| |||
Sbjct 3556466 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 3556525
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | |||||| ||||||||||| | || || ||
Sbjct 3556526 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 3556585
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464
|| | |||||| || || ||||| |||||||||||||| |||||||| ||
Sbjct 3556586 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGAT 3556635
>seq6
Length=6290098
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || |||| || | || || || ||||| || || ||||| ||||| ||
Sbjct 607609 CCACCACGCAGACGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGAC 607550
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | ||||| || | |||||| |||||||| || | | || |||||||| |||
Sbjct 607549 AAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 607490
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||| ||||| ||||| | ||||||| || |||||||||| ||||| ||
Sbjct 607489 ATGCCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAACC 607430
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | || || || || || || |||||||||||||| ||||||||
Sbjct 607429 TCGAGCGTAATCGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 607383
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | |||| || || || || || || |||||||| ||||||
Sbjct 607837 CCGCCACGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCGCTC 607778
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | |||||| || ||||| || || | || ||||| || |||
Sbjct 607777 AGAGTGCGACCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGA 607718
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| | ||| || || || ||||| | ||| || |||
Sbjct 607717 ATACCCTCCTTGTCCTGGATCTTGGACTTCACATTATCAATCGTGTCAGATGACTCGACT 607658
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || || ||||| || || ||||||||||| ||||||||
Sbjct 607657 TCCAATGTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 607611
Score = 84.2 bits (92), Expect = 4e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 195992 TGGGTCGTCTTTGACGAAATCCACTACATGTCCGACGATGCGCGTGGTACCGTGTGGGAA 196051
|||||||||||||||||||| ||||||||| ||| | | | ||| ||| ||||||
Sbjct 4861779 TGGGTCGTCTTTGACGAAATTCACTACATGAGAGACAAGACTAGAGGTGTCGTTTGGGAA 4861838
Query 196052 GAAAGCCTTATCCTCATCCCGGATACCATCCGCTGTGTCTTTTTGTCCGCGACTGTTCCC 196111
|| | | | || || | || |||| |||||| ||||| ||||||| || |||||
Sbjct 4861839 GAGACCATCATTCTTCTTCCTGATAAGGTCCGCTACGTCTTCCTGTCCGCCACCATTCCC 4861898
Query 196112 AACGCC 196117
||||||
Sbjct 4861899 AACGCC 4861904
>seq14
Length=3529981
Score = 129 bits (142), Expect = 1e-24
Identities = 665/1040 (64%), Gaps = 48/1040 (5%)
Strand=Plus/Plus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||||||||| | | |||||| |||||| |||||| || || ||| ||||||
Sbjct 2705096 CGCCACTGGATGTATTCGGAGGGGGTGCTGTCCAAGTGGTTATCGATGTGGGCGAAAGCG 2705155
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099
||||| | ||| || || || ||||| |||| | | | | | || ||
Sbjct 2705156 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCAACGGTGGGG 2705215
Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159
| | || || || ||||| ||||| || || | ||| || ||||| ||||| |||||
Sbjct 2705216 ATAAGT-TCACCAGTAAGGACGTTGATAAGGGTGGACTTTCCGGCACCGTTGGGACCAAT 2705274
Query 225160 CACGCCAATCCGGGAT--GACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGG- 225216
||| | || ||||| || | ||| ||| || | || | |||||| ||
Sbjct 2705275 GACGGCGATACGGGAGCCGAGAGAGCA--CTGGAAGGAGATGTCGG---AGATCTGGGGC 2705329
Query 225217 --GCCAGTTT---GGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGG 225265
| ||| |||| |||| || | ||||||| ||||| |
Sbjct 2705330 TTGGTAGTACCGGGGTACTGGAAGGACATCTTGCTGGCACGCAGA------ATGGCCTTG 2705383
Query 225266 TCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCG 225325
|||||| | | |||||| ||||| |||||||||||||| ||| || | | |
Sbjct 2705384 GCCTTGGTCTTGACACCCTCGAGGAAACCGGGCTCGGGGAAGGAGAACTCCATCTCGGAG 2705443
Query 225326 TCCTTCAGGTCGTAGTAAGA--TGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGT 225383
|| || |||||||| || || | | || || ||| ||||| | ||||
Sbjct 2705444 TCGGAGAGCTCGTAGTAGGACTTGGCGGCAGGGTTCTTCTTG--ACGAACTCCTTGAGGT 2705501
Query 225384 TTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACT 225442
| || ||| | | ||||||| | || |||| || || || ||| | ||| ||
Sbjct 2705502 TACCACGGTAGCGCTTAAGCTTGAAGCGCT---CGTAGTGGACGATGTGCTG-GCAGACG 2705557
Query 225443 GCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTT 225501
||| |||||||||||||||||||| || |||||||| | || | | || | |
Sbjct 2705558 TTGTCGAGGAAGCCAGAGTCGTGGGAGACGATGATGGAAGTGCAGG---GGGAGTTCAT- 2705613
Query 225502 GAGGTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCA 225560
||||| || | |||||| ||||| | ||||||| |||||| ||||| ||||| |
Sbjct 2705614 GAGGTA-GTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTGGTAGGCTCGTCGA 2705672
Query 225561 GAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGC 225620
|||||||||| || | | | || || ||| || |||| || |||||| ||||| |
Sbjct 2705673 GAAGCAGGATATCGGGAGCCTCGAAGACGGCACGGCAAAGAGCCAACTTCATCTTCCAAC 2705732
Query 225621 CCCCGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGA 225680
| || ||||||| ||| | | | | | || ||| |||||| |||| ||
Sbjct 2705733 CACCAGACAGGGCAGAGATCTCACCCTTGACCATGGCCTCGGTGAAGCCGAACTCGTTGA 2705792
Query 225681 GCGT---CTGGATAATGCGCTCGGGAGAGCT-GCGAGCGGCAACGTTGGGGTCGGACGAG 225736
|| | || || | | || | ||| || | | ||||| || | | | |
Sbjct 2705793 GCTTGGCCTCGACATCGGCCT-GAGAGGTCTCGACACCGGCATCGGCAAGCTTCTTCATG 2705851
Query 225737 AGGTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACC 225796
| ||| |||||| || | | ||| | ||| | |||||| || ||| | ||
Sbjct 2705852 GTCCACTCAATGGTGGTCATCTCAGTGTCAGCAGAGTCCAGGTCGTGCTCGACGAAGACG 2705911
Query 225797 GTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGC 225856
||| || || || | |||||| ||||| | ||| | || || ||||| |
Sbjct 2705912 GTCTTGACCTCGGACTGCTTGGGGAAACCCTCGACCTGCTCGTTGTTGATGGCACGCATG 2705971
Query 225857 AGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATG 225916
|| ||| ||| || | |||||||||||| || ||||| | | || ||||||| |
Sbjct 2705972 AGAGTAGACTTTCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTGAGG 2706031
Query 225917 TTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCG 225976
|||| | || ||| || || |||||| |||| ||||| || ||||| ||| | |
Sbjct 2706032 CGGAGGTGGGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCGAGAGAGAAGGTGCAGTTG 2706091
Query 225977 CACAGGTCCTCACCCTCCTC 225996
|| |||||||||||||||||
Sbjct 2706092 CAAAGGTCCTCACCCTCCTC 2706111
>seq19
Length=1156358
Score = 109 bits (120), Expect = 1e-18
Identities = 213/313 (68%), Gaps = 4/313 (1%)
Strand=Plus/Minus
Query 59297 CCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGCGCC 59356
|| ||||| || ||||| ||| ||||| || || || ||||||| ||||| | |
Sbjct 85259 CCAGTGTGAACATCCTCAGAGAAACCAATTTCGGCCGTTCCGCCGACCTCGACAAGAGAC 85200
Query 59357 TCTCGGCGGTAGACTGCGCATGTC--CCGACGCACACGGCGCCGCCAAAGGTGTCGCGAG 59414
|| || ||||||| | |||| | || ||||| | | | | || | ||| |||
Sbjct 85199 TCACGACGGTAGA--GGGCATTGCTACCAACGCAGATTGAGGCTCCCCATCTGTTACGAT 85142
Query 59415 AAACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAAG 59474
||||| | || ||||||||| | |||||| || || ||| | ||||||||||||
Sbjct 85141 TGACCTGCACGACACGGTAGAATAATTCCTGAGTGGCACCCGCACCCTGCTCAACCCAAG 85082
Query 59475 TCTGGTCGGGGCGAACCTCGAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGTCAT 59534
| ||||| || |||| |||| ||| |||| |||| || |||| |||||
Sbjct 85081 TTTGGTCATCAGTGACGCGGAAGTACTGAGGGCTCTGAACAAGGGCCGTCTTATCGTCAC 85022
Query 59535 GGGAAAAGTAGGGCATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCATCGA 59594
| | ||| | |||||| | |||||||||| || |||||||| |||||||
Sbjct 85021 CCAAGTGCTCAACCATCAATTCCTTAACAAAGTCAGGGCGTGGGCAGAAGTCGGCATCGA 84962
Query 59595 AGATGGCAAAGAA 59607
| |||||||||||
Sbjct 84961 AAATGGCAAAGAA 84949
>seq12
Length=1275854
Score = 89.7 bits (98), Expect = 9e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAG 225504
||| |||||||| |||||||| || || || | | | || | || ||||||
Sbjct 1105407 GTCGAGGAAGCCGGAGTCGTGAGAAACGATCAAACTGGTGATGTCGGGGTGGGTCTTGAG 1105348
Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564
|| | |||||| || | |||| || |||| |||||| ||||||||||||| |
Sbjct 1105347 GTAGTTCTCGAGCCAGGCGATGTTGGCAACATCCAAGTGGTTAGTAGGTTCGTCCAACAA 1105288
Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624
||||| ||| || | | || || || || | | || || |||||| ||||| || ||
Sbjct 1105287 CAGGACGTCCGCGCCCTTCAGCATAGCACGAGCCAAAGCCAACTTCATCTTCCATCCTCC 1105228
Query 225625 GGACAGGGAGCCGA 225638
||||||||||||||
Sbjct 1105227 GGACAGGGAGCCGA 1105214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921622008310480
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