Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq10 185 2e-41 seq6 149 1e-30 seq14 129 1e-24 seq19 109 1e-18 seq12 89.7 9e-13 >seq10 Length=4416304 Score = 185 bits (204), Expect = 2e-41 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || |||||||| || |||||||| || |||||| Sbjct 3556406 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3556465 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || |||||||| ||| Sbjct 3556466 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 3556525 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 3556526 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 3556585 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || ||||| |||||||||||||| |||||||| || Sbjct 3556586 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGAT 3556635 >seq6 Length=6290098 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| || | || || || ||||| || || ||||| ||||| || Sbjct 607609 CCACCACGCAGACGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGAC 607550 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | |||||| |||||||| || | | || |||||||| ||| Sbjct 607549 AAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 607490 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| ||||| ||||| | ||||||| || |||||||||| ||||| || Sbjct 607489 ATGCCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAACC 607430 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || || || || |||||||||||||| |||||||| Sbjct 607429 TCGAGCGTAATCGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 607383 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||| || || || || || || |||||||| |||||| Sbjct 607837 CCGCCACGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCGCTC 607778 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| || || | || ||||| || ||| Sbjct 607777 AGAGTGCGACCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGA 607718 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||| || || || ||||| | ||| || ||| Sbjct 607717 ATACCCTCCTTGTCCTGGATCTTGGACTTCACATTATCAATCGTGTCAGATGACTCGACT 607658 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||| || || ||||||||||| |||||||| Sbjct 607657 TCCAATGTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 607611 Score = 84.2 bits (92), Expect = 4e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 195992 TGGGTCGTCTTTGACGAAATCCACTACATGTCCGACGATGCGCGTGGTACCGTGTGGGAA 196051 |||||||||||||||||||| ||||||||| ||| | | | ||| ||| |||||| Sbjct 4861779 TGGGTCGTCTTTGACGAAATTCACTACATGAGAGACAAGACTAGAGGTGTCGTTTGGGAA 4861838 Query 196052 GAAAGCCTTATCCTCATCCCGGATACCATCCGCTGTGTCTTTTTGTCCGCGACTGTTCCC 196111 || | | | || || | || |||| |||||| ||||| ||||||| || ||||| Sbjct 4861839 GAGACCATCATTCTTCTTCCTGATAAGGTCCGCTACGTCTTCCTGTCCGCCACCATTCCC 4861898 Query 196112 AACGCC 196117 |||||| Sbjct 4861899 AACGCC 4861904 >seq14 Length=3529981 Score = 129 bits (142), Expect = 1e-24 Identities = 665/1040 (64%), Gaps = 48/1040 (5%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||| | | |||||| |||||| |||||| || || ||| |||||| Sbjct 2705096 CGCCACTGGATGTATTCGGAGGGGGTGCTGTCCAAGTGGTTATCGATGTGGGCGAAAGCG 2705155 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099 ||||| | ||| || || || ||||| |||| | | | | | || || Sbjct 2705156 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCAACGGTGGGG 2705215 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 | | || || || ||||| ||||| || || | ||| || ||||| ||||| ||||| Sbjct 2705216 ATAAGT-TCACCAGTAAGGACGTTGATAAGGGTGGACTTTCCGGCACCGTTGGGACCAAT 2705274 Query 225160 CACGCCAATCCGGGAT--GACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGG- 225216 ||| | || ||||| || | ||| ||| || | || | |||||| || Sbjct 2705275 GACGGCGATACGGGAGCCGAGAGAGCA--CTGGAAGGAGATGTCGG---AGATCTGGGGC 2705329 Query 225217 --GCCAGTTT---GGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGG 225265 | ||| |||| |||| || | ||||||| ||||| | Sbjct 2705330 TTGGTAGTACCGGGGTACTGGAAGGACATCTTGCTGGCACGCAGA------ATGGCCTTG 2705383 Query 225266 TCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCG 225325 |||||| | | |||||| ||||| |||||||||||||| ||| || | | | Sbjct 2705384 GCCTTGGTCTTGACACCCTCGAGGAAACCGGGCTCGGGGAAGGAGAACTCCATCTCGGAG 2705443 Query 225326 TCCTTCAGGTCGTAGTAAGA--TGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGT 225383 || || |||||||| || || | | || || ||| ||||| | |||| Sbjct 2705444 TCGGAGAGCTCGTAGTAGGACTTGGCGGCAGGGTTCTTCTTG--ACGAACTCCTTGAGGT 2705501 Query 225384 TTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACT 225442 | || ||| | | ||||||| | || |||| || || || ||| | ||| || Sbjct 2705502 TACCACGGTAGCGCTTAAGCTTGAAGCGCT---CGTAGTGGACGATGTGCTG-GCAGACG 2705557 Query 225443 GCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTT 225501 ||| |||||||||||||||||||| || |||||||| | || | | || | | Sbjct 2705558 TTGTCGAGGAAGCCAGAGTCGTGGGAGACGATGATGGAAGTGCAGG---GGGAGTTCAT- 2705613 Query 225502 GAGGTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCA 225560 ||||| || | |||||| ||||| | ||||||| |||||| ||||| ||||| | Sbjct 2705614 GAGGTA-GTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTGGTAGGCTCGTCGA 2705672 Query 225561 GAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGC 225620 |||||||||| || | | | || || ||| || |||| || |||||| ||||| | Sbjct 2705673 GAAGCAGGATATCGGGAGCCTCGAAGACGGCACGGCAAAGAGCCAACTTCATCTTCCAAC 2705732 Query 225621 CCCCGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGA 225680 | || ||||||| ||| | | | | | || ||| |||||| |||| || Sbjct 2705733 CACCAGACAGGGCAGAGATCTCACCCTTGACCATGGCCTCGGTGAAGCCGAACTCGTTGA 2705792 Query 225681 GCGT---CTGGATAATGCGCTCGGGAGAGCT-GCGAGCGGCAACGTTGGGGTCGGACGAG 225736 || | || || | | || | ||| || | | ||||| || | | | | Sbjct 2705793 GCTTGGCCTCGACATCGGCCT-GAGAGGTCTCGACACCGGCATCGGCAAGCTTCTTCATG 2705851 Query 225737 AGGTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACC 225796 | ||| |||||| || | | ||| | ||| | |||||| || ||| | || Sbjct 2705852 GTCCACTCAATGGTGGTCATCTCAGTGTCAGCAGAGTCCAGGTCGTGCTCGACGAAGACG 2705911 Query 225797 GTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGC 225856 ||| || || || | |||||| ||||| | ||| | || || ||||| | Sbjct 2705912 GTCTTGACCTCGGACTGCTTGGGGAAACCCTCGACCTGCTCGTTGTTGATGGCACGCATG 2705971 Query 225857 AGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATG 225916 || ||| ||| || | |||||||||||| || ||||| | | || ||||||| | Sbjct 2705972 AGAGTAGACTTTCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTGAGG 2706031 Query 225917 TTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCG 225976 |||| | || ||| || || |||||| |||| ||||| || ||||| ||| | | Sbjct 2706032 CGGAGGTGGGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCGAGAGAGAAGGTGCAGTTG 2706091 Query 225977 CACAGGTCCTCACCCTCCTC 225996 || ||||||||||||||||| Sbjct 2706092 CAAAGGTCCTCACCCTCCTC 2706111 >seq19 Length=1156358 Score = 109 bits (120), Expect = 1e-18 Identities = 213/313 (68%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 59297 CCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGCGCC 59356 || ||||| || ||||| ||| ||||| || || || ||||||| ||||| | | Sbjct 85259 CCAGTGTGAACATCCTCAGAGAAACCAATTTCGGCCGTTCCGCCGACCTCGACAAGAGAC 85200 Query 59357 TCTCGGCGGTAGACTGCGCATGTC--CCGACGCACACGGCGCCGCCAAAGGTGTCGCGAG 59414 || || ||||||| | |||| | || ||||| | | | | || | ||| ||| Sbjct 85199 TCACGACGGTAGA--GGGCATTGCTACCAACGCAGATTGAGGCTCCCCATCTGTTACGAT 85142 Query 59415 AAACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAAG 59474 ||||| | || ||||||||| | |||||| || || ||| | |||||||||||| Sbjct 85141 TGACCTGCACGACACGGTAGAATAATTCCTGAGTGGCACCCGCACCCTGCTCAACCCAAG 85082 Query 59475 TCTGGTCGGGGCGAACCTCGAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGTCAT 59534 | ||||| || |||| |||| ||| |||| |||| || |||| ||||| Sbjct 85081 TTTGGTCATCAGTGACGCGGAAGTACTGAGGGCTCTGAACAAGGGCCGTCTTATCGTCAC 85022 Query 59535 GGGAAAAGTAGGGCATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCATCGA 59594 | | ||| | |||||| | |||||||||| || |||||||| ||||||| Sbjct 85021 CCAAGTGCTCAACCATCAATTCCTTAACAAAGTCAGGGCGTGGGCAGAAGTCGGCATCGA 84962 Query 59595 AGATGGCAAAGAA 59607 | ||||||||||| Sbjct 84961 AAATGGCAAAGAA 84949 >seq12 Length=1275854 Score = 89.7 bits (98), Expect = 9e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAG 225504 ||| |||||||| |||||||| || || || | | | || | || |||||| Sbjct 1105407 GTCGAGGAAGCCGGAGTCGTGAGAAACGATCAAACTGGTGATGTCGGGGTGGGTCTTGAG 1105348 Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564 || | |||||| || | |||| || |||| |||||| ||||||||||||| | Sbjct 1105347 GTAGTTCTCGAGCCAGGCGATGTTGGCAACATCCAAGTGGTTAGTAGGTTCGTCCAACAA 1105288 Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624 ||||| ||| || | | || || || || | | || || |||||| ||||| || || Sbjct 1105287 CAGGACGTCCGCGCCCTTCAGCATAGCACGAGCCAAAGCCAACTTCATCTTCCATCCTCC 1105228 Query 225625 GGACAGGGAGCCGA 225638 |||||||||||||| Sbjct 1105227 GGACAGGGAGCCGA 1105214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622008310480