Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6 421 1e-112 seq9 324 3e-83 >seq6 Length=6290098 Score = 421 bits (466), Expect = 1e-112 Identities = 1251/1902 (66%), Gaps = 87/1902 (5%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| ||||||| | || || || |||| || | ||||||||||||||| |||||| Sbjct 2838157 ACGGTGAACTGAATAGGGGCAGAAGCTGCCTGCGTACGCAGGTAGTACATGCCCGTCTTG 2838216 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || ||| |||| || || |||||| || | ||| ||| | | || Sbjct 2838217 AGACCAAGCTTCCAGCCGGCGAAGTGCATACTGGTGATCTTGCCCAT-------TGTCGG 2838269 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 ||||| || || ||| ||||||||| |||||||| ||||| | || || Sbjct 2838270 --GTCCTT---CATGTGGATGTTAAGGGACTGGGACTGGTCGATGAAGGCACCACGGTCG 2838324 Query 243917 GCGGCCATGGTGATGA--GGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCT 243974 || ||||| ||| | ||| | ||| || ||||| | | |||||||| | | || Sbjct 2838325 GCAGCCATC-TGAACAACGGTGCG-CTGGGAGATCTCCCAAACGGTCTTGTACAGAGCCT 2838382 Query 243975 TGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGG 244034 ||| | |||| | ||||||||| | || || || | | |||||| || Sbjct 2838383 TGACCTCAGCGGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTCGGCGATGATACGGT 2838442 Query 244035 TGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCT----CGACCAGGTGCCTG 244090 | |||| |||| ||||||||||| | | || ||| | |||||| | Sbjct 2838443 TCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAACAACCAGGGG---- 2838498 Query 244091 TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150 || || ||||| ||||| || | || || || || ||||||| |||| | || ||| Sbjct 2838499 TTGACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTAGGGC 2838558 Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210 |||| || ||| ||||||||| ||||||| ||| ||||| |||||||| | || Sbjct 2838559 TCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACG 2838618 Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCC---AGTCC 244267 |||| |||||| | ||| |||||| || ||| ||| ||| ||| ||||| Sbjct 2838619 AGCAAACTGTTGCGCACACCGTGCTCCTTGAT-------CTG--CTCCTTCAGTGAGTCC 2838669 Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327 || || || ||||||| | | |||| ||||||||| |||| || | |||| | Sbjct 2838670 CA-ATCCC--AGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACCCTGG 2838726 Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTA-CAGCT 244386 || ||| ||||||||| || | ||||| || || || |||||||| | ||| Sbjct 2838727 GAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACAGAC 2838786 Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446 | || || || |||| ||||||||||||||||||| ||||||| | || ||||||| Sbjct 2838787 ATGGTA-AGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACGGGCCT- 2838844 Query 244447 GCCGCAGGT--GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCG 244504 | | || ||| || |||| | | ||| | || || || ||||| || || Sbjct 2838845 -CAGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCA 2838903 Query 244505 ATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTG 244564 | || ||||| | ||| ||| ||||| | || ||||| |||||||| |||| Sbjct 2838904 AGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCGGGAACGGGGTAGTGGTTG 2838963 Query 244565 CCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA--TGCGGACGACGTCGGCCAGCAGCT 244622 | || || | |||||| | |||||| | | || | | || ||| ||| || Sbjct 2838964 ACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTA--ACCTCGTGAAGCTTCT 2839021 Query 244623 GAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGA 244682 | |||||||| | | | ||| | | || | || || | || || | Sbjct 2839022 GGAAGTCGTAGAC------ACCATCGTTG-TAGTCA-----ACGAAGGTGGGCAGAGCAA 2839069 Query 244683 CGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGC 244742 | |||| ||||||||| || ||||| || | | ||||| | ||||| |||| Sbjct 2839070 GGGAAGCCAAGTTGCAGACAGCGACCTCATCGGGTGCGCAGTACTCAATGATCTCAGTGC 2839129 Query 244743 AGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGT 244802 | ||||| || ||| || || |||| || || ||| |||| |||| || | Sbjct 2839130 AAAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCAT 2839189 Query 244803 CCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGA 244862 ||||||| ||||||||||| || |||||| ||| || |||||| | | ||| | Sbjct 2839190 CCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAA 2839249 Query 244863 GGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGG 244922 | | | ||||||| ||| ||||| |||||||||| |||||| ||||| || Sbjct 2839250 GCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGG 2839309 Query 244923 CCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGAC 244982 |||||||||| ||| || || | ||||| |||||| ||||||||||| Sbjct 2839310 CCTCGAACTCCTCGCCATAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACATGAGGG 2839369 Query 244983 TCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGA 245042 |||| ||| || | || ||| |||| |||||| || |||||||||||||| || ||| Sbjct 2839370 TCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGA 2839429 Query 245043 AGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAA 245102 | ||||| | || | ||| ||| |||| |||||| | || |||| || || | Sbjct 2839430 AAAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGAACTCGA 2839489 Query 245103 AGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTC 245162 |||||||| ||||||| ||||| | ||| | ||||| ||||| || ||||||||||| | Sbjct 2839490 AGACGTCGGCGTGCCACGGCTCAAGGTAAATAGCGAAAGCGCCAGGACGCTTGTTGCCAC 2839549 Query 245163 CCTGGTCCACCATCCTCTCGAGC-GCGTTG---AAGATGCGCAGGGTAGGCACTATGCCG 245218 ||||||| | | | ||||| | |||| |||| || || | || | | ||| Sbjct 2839550 CCTGGTCGA----CGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCG 2839605 Query 245219 TTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGA---TG 245275 || ||| |||||||||||| || |||| ||| || | | || | ||| | Sbjct 2839606 TTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCAC-GAATACGGTGAGCGTT 2839664 Query 245276 GACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCT 245335 || | || | || || || ||||||||| | ||||||| |||||| |||||| Sbjct 2839665 GAGA--CCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAG 2839722 Query 245336 ATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG 245395 || ||||| || ||| |||||||| || || ||||| || ||||||||| || Sbjct 2839723 ATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGA 2839782 Query 245396 GGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAAC 245455 ||| | | | |||||| || |||||| ||| ||||| ||| | ||| || | || Sbjct 2839783 GGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATGAGG 2839842 Query 245456 CCGTACGTCTGGA-GCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCA--CCTC 245512 ||| |||| || | | || |||| ||| || || || ||| | ||| | | Sbjct 2839843 TTGTAGGTCTCGATGACGCGC-TCGACGTTATCACCCCAGA--TGCCGACTGCAACACGC 2839899 Query 245513 ATGAGGGTGTGCTGGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAG 245569 |||| |||||||||| ||||| || || || | |||||||| ||| || Sbjct 2839900 ATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAG---CTTGAGCAGGTATGAT 2839956 Query 245570 CGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCG 245611 | ||| || |||||||| || ||||| |||| |||||| Sbjct 2839957 CTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCG 2839998 >seq9 Length=4851470 Score = 324 bits (358), Expect = 3e-83 Identities = 615/907 (68%), Gaps = 69/907 (8%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| ||||||||||||||||||||| || Sbjct 3450076 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 3450135 Query 42360 GCCAAGGACACGGCCGGCTGGGAGT-CACTGTCTGAGA--ACGAAAAGTTTTTCCTCAAA 42416 ||||||| || |||| | || || || | || |||| ||| || Sbjct 3450136 TCCAAGGATCTCCACGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTCT 3450195 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 |||| || |||||||||||||| || ||||| || |||||||||||||||| | | Sbjct 3450196 CACATTCTTGCCTTCTTCGCCGCATCGGACGGTATCGTCAATGAGAACCTGGTCGAGCGC 3450255 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 ||| ||||| ||| | |||||| ||||||||||||||||||||||| || Sbjct 3450256 TTCTCCGGCGAGGTCCAGGTCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGATG 3450315 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTC 42596 |||||| | ||||||||| ||| || || || |||| |||||| ||| |||| Sbjct 3450316 GAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGAGCCCGCG 3450375 Query 42597 GAGCGTAACGGGCTGTTCAAGGCCATGGAGACGA-------------------------- 42630 |||| | | || ||||| ||||| || || | Sbjct 3450376 CAGCGCACCTACCTCTTCAACGCCATTGACACCAGTATGTGAACACATCCCGCGCCTACA 3450435 Query 42631 TGCCCT------------GCATCA-AG--------------AAGAAGGCGGACTGGGCGC 42663 ||||| |||||| || |||||||| |||||||| | Sbjct 3450436 TGCCCGCATCGCTAACTAGCATCACAGTCCCTGCCATTCGCAAGAAGGCTGACTGGGCCC 3450495 Query 42664 TCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722 | || |||||| || | || | | | |||| | || | ||||| |||||| |||| Sbjct 3450496 TGAAGTGGATC-AGCGATGAGAACTCCTCCTTCGCCCAGCGTCTGGTTGCCTTTGCCGCT 3450554 Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGT 42781 || ||||| ||||||||| || || || ||||||||||| ||||||||| || || Sbjct 3450555 GTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTTTGGCTCAAGAAGCGTGGC 3450614 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 || |||||||| || |||||||| ||||| |||||| | | |||||||| ||||| | Sbjct 3450615 CTC-ATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGTCTGCACAC 3450673 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT 42901 ||||||||||||||| ||| ||| ||||||| |||| | | | || ||| ||| Sbjct 3450674 CGACTTTGCCTGCCTCTTGTACTC---TCACCTCAAGCAC---CGCCCCAACAAGCAGGT 3450727 Query 42902 C---CGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 | || ||||||| || ||||| |||| ||| ||||||||||||| || | || Sbjct 3450728 CATTGAGGACATCATCGTTGATGCCGTCAAGATTGAGCAGGAGTTCCTCACTGAGGCTCT 3450787 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 |||| | || ||||||||||| | || | ||| ||||||| ||| ||| || Sbjct 3450788 GCCCTGCGCTCTTCTCGGCATGAACTCCAACTTGATGAAGCAGTACATTGAGTTCGTTGC 3450847 Query 43019 CGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGA 43078 ||||| |||||| | | || | | ||||||| | | ||||||||| Sbjct 3450848 CGACCGCCTCCTGGTCGCTCTTGGCAACGACAAGGTCTACAAGTCCTCCAACCCCTTCGA 3450907 Query 43079 CTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGA 43138 ||| |||||||||||||| | | |||||||||||||| || |||||||| ||||| || Sbjct 3450908 CTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTCGCTGA 3450967 Query 43139 CTACCAG 43145 ||||||| Sbjct 3450968 CTACCAG 3450974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338798655840