Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq6 421 1e-112
seq9 324 3e-83
>seq6
Length=6290098
Score = 421 bits (466), Expect = 1e-112
Identities = 1251/1902 (66%), Gaps = 87/1902 (5%)
Strand=Plus/Plus
Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796
||| ||||||| | || || || |||| || | ||||||||||||||| ||||||
Sbjct 2838157 ACGGTGAACTGAATAGGGGCAGAAGCTGCCTGCGTACGCAGGTAGTACATGCCCGTCTTG 2838216
Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856
|| ||| |||| || || |||||| || | ||| ||| | | ||
Sbjct 2838217 AGACCAAGCTTCCAGCCGGCGAAGTGCATACTGGTGATCTTGCCCAT-------TGTCGG 2838269
Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916
||||| || || ||| ||||||||| |||||||| ||||| | || ||
Sbjct 2838270 --GTCCTT---CATGTGGATGTTAAGGGACTGGGACTGGTCGATGAAGGCACCACGGTCG 2838324
Query 243917 GCGGCCATGGTGATGA--GGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCT 243974
|| ||||| ||| | ||| | ||| || ||||| | | |||||||| | | ||
Sbjct 2838325 GCAGCCATC-TGAACAACGGTGCG-CTGGGAGATCTCCCAAACGGTCTTGTACAGAGCCT 2838382
Query 243975 TGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGG 244034
||| | |||| | ||||||||| | || || || | | |||||| ||
Sbjct 2838383 TGACCTCAGCGGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTCGGCGATGATACGGT 2838442
Query 244035 TGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCT----CGACCAGGTGCCTG 244090
| |||| |||| ||||||||||| | | || ||| | |||||| |
Sbjct 2838443 TCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAACAACCAGGGG---- 2838498
Query 244091 TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150
|| || ||||| ||||| || | || || || || ||||||| |||| | || |||
Sbjct 2838499 TTGACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTAGGGC 2838558
Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210
|||| || ||| ||||||||| ||||||| ||| ||||| |||||||| | ||
Sbjct 2838559 TCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACG 2838618
Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCC---AGTCC 244267
|||| |||||| | ||| |||||| || ||| ||| ||| ||| |||||
Sbjct 2838619 AGCAAACTGTTGCGCACACCGTGCTCCTTGAT-------CTG--CTCCTTCAGTGAGTCC 2838669
Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327
|| || || ||||||| | | |||| ||||||||| |||| || | |||| |
Sbjct 2838670 CA-ATCCC--AGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACCCTGG 2838726
Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTA-CAGCT 244386
|| ||| ||||||||| || | ||||| || || || |||||||| | |||
Sbjct 2838727 GAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACAGAC 2838786
Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446
| || || || |||| ||||||||||||||||||| ||||||| | || |||||||
Sbjct 2838787 ATGGTA-AGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACGGGCCT- 2838844
Query 244447 GCCGCAGGT--GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCG 244504
| | || ||| || |||| | | ||| | || || || ||||| || ||
Sbjct 2838845 -CAGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCA 2838903
Query 244505 ATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTG 244564
| || ||||| | ||| ||| ||||| | || ||||| |||||||| ||||
Sbjct 2838904 AGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCGGGAACGGGGTAGTGGTTG 2838963
Query 244565 CCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA--TGCGGACGACGTCGGCCAGCAGCT 244622
| || || | |||||| | |||||| | | || | | || ||| ||| ||
Sbjct 2838964 ACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTA--ACCTCGTGAAGCTTCT 2839021
Query 244623 GAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGA 244682
| |||||||| | | | ||| | | || | || || | || || |
Sbjct 2839022 GGAAGTCGTAGAC------ACCATCGTTG-TAGTCA-----ACGAAGGTGGGCAGAGCAA 2839069
Query 244683 CGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGC 244742
| |||| ||||||||| || ||||| || | | ||||| | ||||| ||||
Sbjct 2839070 GGGAAGCCAAGTTGCAGACAGCGACCTCATCGGGTGCGCAGTACTCAATGATCTCAGTGC 2839129
Query 244743 AGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGT 244802
| ||||| || ||| || || |||| || || ||| |||| |||| || |
Sbjct 2839130 AAAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCAT 2839189
Query 244803 CCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGA 244862
||||||| ||||||||||| || |||||| ||| || |||||| | | ||| |
Sbjct 2839190 CCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAA 2839249
Query 244863 GGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGG 244922
| | | ||||||| ||| ||||| |||||||||| |||||| ||||| ||
Sbjct 2839250 GCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGG 2839309
Query 244923 CCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGAC 244982
|||||||||| ||| || || | ||||| |||||| |||||||||||
Sbjct 2839310 CCTCGAACTCCTCGCCATAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACATGAGGG 2839369
Query 244983 TCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGA 245042
|||| ||| || | || ||| |||| |||||| || |||||||||||||| || |||
Sbjct 2839370 TCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGA 2839429
Query 245043 AGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAA 245102
| ||||| | || | ||| ||| |||| |||||| | || |||| || || |
Sbjct 2839430 AAAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGAACTCGA 2839489
Query 245103 AGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTC 245162
|||||||| ||||||| ||||| | ||| | ||||| ||||| || ||||||||||| |
Sbjct 2839490 AGACGTCGGCGTGCCACGGCTCAAGGTAAATAGCGAAAGCGCCAGGACGCTTGTTGCCAC 2839549
Query 245163 CCTGGTCCACCATCCTCTCGAGC-GCGTTG---AAGATGCGCAGGGTAGGCACTATGCCG 245218
||||||| | | | ||||| | |||| |||| || || | || | | |||
Sbjct 2839550 CCTGGTCGA----CGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCG 2839605
Query 245219 TTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGA---TG 245275
|| ||| |||||||||||| || |||| ||| || | | || | ||| |
Sbjct 2839606 TTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCAC-GAATACGGTGAGCGTT 2839664
Query 245276 GACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCT 245335
|| | || | || || || ||||||||| | ||||||| |||||| ||||||
Sbjct 2839665 GAGA--CCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAG 2839722
Query 245336 ATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG 245395
|| ||||| || ||| |||||||| || || ||||| || ||||||||| ||
Sbjct 2839723 ATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGA 2839782
Query 245396 GGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAAC 245455
||| | | | |||||| || |||||| ||| ||||| ||| | ||| || | ||
Sbjct 2839783 GGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATGAGG 2839842
Query 245456 CCGTACGTCTGGA-GCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCA--CCTC 245512
||| |||| || | | || |||| ||| || || || ||| | ||| | |
Sbjct 2839843 TTGTAGGTCTCGATGACGCGC-TCGACGTTATCACCCCAGA--TGCCGACTGCAACACGC 2839899
Query 245513 ATGAGGGTGTGCTGGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAG 245569
|||| |||||||||| ||||| || || || | |||||||| ||| ||
Sbjct 2839900 ATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAG---CTTGAGCAGGTATGAT 2839956
Query 245570 CGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCG 245611
| ||| || |||||||| || ||||| |||| ||||||
Sbjct 2839957 CTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCG 2839998
>seq9
Length=4851470
Score = 324 bits (358), Expect = 3e-83
Identities = 615/907 (68%), Gaps = 69/907 (8%)
Strand=Plus/Plus
Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359
|||||| |||||||||||||| || ||| ||||||||||||||||||||| ||
Sbjct 3450076 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 3450135
Query 42360 GCCAAGGACACGGCCGGCTGGGAGT-CACTGTCTGAGA--ACGAAAAGTTTTTCCTCAAA 42416
||||||| || |||| | || || || | || |||| ||| ||
Sbjct 3450136 TCCAAGGATCTCCACGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTCT 3450195
Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476
|||| || |||||||||||||| || ||||| || |||||||||||||||| | |
Sbjct 3450196 CACATTCTTGCCTTCTTCGCCGCATCGGACGGTATCGTCAATGAGAACCTGGTCGAGCGC 3450255
Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536
||| ||||| ||| | |||||| ||||||||||||||||||||||| ||
Sbjct 3450256 TTCTCCGGCGAGGTCCAGGTCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGATG 3450315
Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTC 42596
|||||| | ||||||||| ||| || || || |||| |||||| ||| ||||
Sbjct 3450316 GAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGAGCCCGCG 3450375
Query 42597 GAGCGTAACGGGCTGTTCAAGGCCATGGAGACGA-------------------------- 42630
|||| | | || ||||| ||||| || || |
Sbjct 3450376 CAGCGCACCTACCTCTTCAACGCCATTGACACCAGTATGTGAACACATCCCGCGCCTACA 3450435
Query 42631 TGCCCT------------GCATCA-AG--------------AAGAAGGCGGACTGGGCGC 42663
||||| |||||| || |||||||| |||||||| |
Sbjct 3450436 TGCCCGCATCGCTAACTAGCATCACAGTCCCTGCCATTCGCAAGAAGGCTGACTGGGCCC 3450495
Query 42664 TCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722
| || |||||| || | || | | | |||| | || | ||||| |||||| ||||
Sbjct 3450496 TGAAGTGGATC-AGCGATGAGAACTCCTCCTTCGCCCAGCGTCTGGTTGCCTTTGCCGCT 3450554
Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGT 42781
|| ||||| ||||||||| || || || ||||||||||| ||||||||| || ||
Sbjct 3450555 GTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTTTGGCTCAAGAAGCGTGGC 3450614
Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841
|| |||||||| || |||||||| ||||| |||||| | | |||||||| ||||| |
Sbjct 3450615 CTC-ATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGTCTGCACAC 3450673
Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT 42901
||||||||||||||| ||| ||| ||||||| |||| | | | || ||| |||
Sbjct 3450674 CGACTTTGCCTGCCTCTTGTACTC---TCACCTCAAGCAC---CGCCCCAACAAGCAGGT 3450727
Query 42902 C---CGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958
| || ||||||| || ||||| |||| ||| ||||||||||||| || | ||
Sbjct 3450728 CATTGAGGACATCATCGTTGATGCCGTCAAGATTGAGCAGGAGTTCCTCACTGAGGCTCT 3450787
Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018
|||| | || ||||||||||| | || | ||| ||||||| ||| ||| ||
Sbjct 3450788 GCCCTGCGCTCTTCTCGGCATGAACTCCAACTTGATGAAGCAGTACATTGAGTTCGTTGC 3450847
Query 43019 CGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGA 43078
||||| |||||| | | || | | ||||||| | | |||||||||
Sbjct 3450848 CGACCGCCTCCTGGTCGCTCTTGGCAACGACAAGGTCTACAAGTCCTCCAACCCCTTCGA 3450907
Query 43079 CTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGA 43138
||| |||||||||||||| | | |||||||||||||| || |||||||| ||||| ||
Sbjct 3450908 CTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTCGCTGA 3450967
Query 43139 CTACCAG 43145
|||||||
Sbjct 3450968 CTACCAG 3450974
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944338798655840
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