Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq6 159 4e-34 seq9 120 4e-22 seq8 91.5 2e-13 >seq6 Length=6290098 Score = 159 bits (176), Expect = 4e-34 Identities = 1133/1812 (63%), Gaps = 67/1812 (4%) Strand=Plus/Plus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 || ||||||||||| ||||||||||| || |||||||| | | ||||| || Sbjct 2838193 CGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATACTGGTG 2838252 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | |||| | ||| || | |||| || ||| | ||||| || ||||||||| Sbjct 2838253 ATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTAAGGGACTGGGACTGGTCGATGAAG 2838312 Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTT 113773 ||||| || || ||||| | || || | | || | || ||||| || || Sbjct 2838313 GCACCACGGTCGGCAGCCATCTGAA---CAACGGTGCGCTGGGAGATCTCCCAAACGGTC 2838369 Query 113774 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCC 113833 |||| || ||| | ||| | || || | ||| || ||||| || ||| | Sbjct 2838370 TTGTACAGAGCCTTGACCTCAGCGGGAATGTTGGGGATGTTCTGGATAGA---ACCGTTC 2838426 Query 113834 TTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCC 113890 | | | |||| | | |||||| | | ||||| || || || | |||||||| | Sbjct 2838427 TCGGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTC 2838486 Query 113891 A----CGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGAT 113946 | | || | |||||||| ||||| || || || || | | ||||| Sbjct 2838487 AACAACCAGGGG----TTGACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGAT 2838542 Query 113947 ATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGT 114006 |||| ||||| ||||| |||||||| ||||| |||||||| || | |||||||| || Sbjct 2838543 GTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGT 2838602 Query 114007 GGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAG 114066 |||||||| || | ||| | ||||| || | ||| | ||| | || | ||||| || Sbjct 2838603 AGGCATGGGAGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAG 2838662 Query 114067 GGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACC 114126 | |||||| || || | | || | | |||||| || ||||||||||||| Sbjct 2838663 TGAGTCCCAATCCCAGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACC 2838722 Query 114127 TTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGA 114186 |||||| || || ||||| | || ||| | |||||| ||| |||| | || Sbjct 2838723 CTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCA--GCTGA 2838780 Query 114187 GCTCGCCTCG--AGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTG 114244 | | | | || || ||||| || || ||||| || || || | | | Sbjct 2838781 ACAGACATGGTAAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACGG 2838840 Query 114245 GCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACA 114304 ||||| || || || | | || | || |||| || ||||| |||||| Sbjct 2838841 GCCTCAGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACA 2838900 Query 114305 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAA 114361 || || ||||| ||||| || | ||| || || ||||| ||| ||||| || Sbjct 2838901 CCAAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGC---CTCGGGAACGGGGTAG 2838957 Query 114362 AAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGC 114421 || ||| || | | | || | || || |||| || | || |||||| Sbjct 2838958 TGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTAACCTCGTGAAGC 2839017 Query 114422 TTTTCGTAATC----AAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 114477 || | | | || | | | || | | ||| || | | || || || | || Sbjct 2839018 TTCTGGAAGTCGTAGACACCATCG-TTGTAGTCA---ACGAAGGTGGGCAGAGCAAGGGA 2839073 Query 114478 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 114537 |||| || || |||| | |||||| | |||||| || || || || || | Sbjct 2839074 AGCCAAGTTGCAGACAGCGACCTCATCGGGTGCGCAGTACTCAATGATCTCAGTGCAAAG 2839133 Query 114538 ATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 114597 || || || || || || | |||||| || || ||| ||| |||||||| Sbjct 2839134 GTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTT 2839193 Query 114598 GTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CAT 114656 |||||||||| | || | || ||||| || || | || ||| || || | ||| | | | Sbjct 2839194 GTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAGCTT 2839253 Query 114657 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTGTAGA 114710 | | | || | ||| ||| || |||| |||| ||||||||| ||| | Sbjct 2839254 CTGGGCCTTG----ATGGTCTTG---CGACCCTTGCCCTCGCGCTCGTACTTCTCGTACA 2839306 Query 114711 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 114770 ||| || ||||| || || | || | || || || || || ||||| | || Sbjct 2839307 AGGCCTCGAACTCCTCGCCATAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACATGA 2839366 Query 114771 GAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTG 114830 | | ||| | | || ||| || | ||||||||| || || |||||||||||||| Sbjct 2839367 GGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGA 2839426 Query 114831 AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 114890 ||| || || || || | || || | || || || ||||| |||| || | Sbjct 2839427 GGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGAACT 2839486 Query 114891 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG----- 114945 | | || || ||||||||||| || ||||| | |||| | || | |||| Sbjct 2839487 CGAAGACGTCGGCGTGCCACGGCTCAAGGTAAATAGCGAAAGCGCC---AGGACGCTTGT 2839543 Query 114946 -ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATAC 115004 ||| |||||| || || | || ||| ||||| || |||||||| ||||||| || Sbjct 2839544 TGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACAC 2839603 Query 115005 CATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGT 115064 | | || ||| || || || |||| || | |||| | | | || || Sbjct 2839604 CGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGAATACGGTGAGCGT 2839663 Query 115065 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 115124 | |||||| || || ||| ||| ||||| ||||| | |||| || |||||| Sbjct 2839664 TGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGA 2839723 Query 115125 TCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTG 115184 | || || || ||||| |||| | ||| |||||||| |||| || | | Sbjct 2839724 TACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAG 2839783 Query 115185 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTT 115242 | ||||||||||||||||| || || | || ||| ||| | | |||| |||||| Sbjct 2839784 GGGTACCAGCGTTGAAGAGTGTGGGGGAGGCATGGGTGA--AGAACTTGCTGGACATGAG 2839841 Query 115243 ATCGTAGGTCTCCAAGACG-GCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCA 115301 | ||||||||| | |||| || | | || || || || |||| | || |||| Sbjct 2839842 GTTGTAGGTCTCGATGACGCGCTCG-ACGTTATCACCCCAGATGCCGACTGCAACACGCA 2839900 Query 115302 TAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCT 115361 | | ||||| |||||| | || | | ||||| ||| | | ||||| ||| Sbjct 2839901 TGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGCAGGTATGATCTCT 2839960 Query 115362 CCAAGGTCTTGA 115373 ||| |||||||| Sbjct 2839961 CCAGGGTCTTGA 2839972 >seq9 Length=4851470 Score = 120 bits (132), Expect = 4e-22 Identities = 303/456 (66%), Gaps = 10/456 (2%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| | || |||||||| |||||||| ||||| ||| | | | ||| |||||||| Sbjct 3450971 GTAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCAT 3450912 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 || || || ||||| || || | | |||| | || | | ||||| Sbjct 3450911 GAAGTCGAAGGGGTTGGAGGACTTGTAGACCTTGTCGTTGCCAAGAGCGACC--AGGAGG 3450854 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 || || | ||| |||||||||||| |||| | |||||||| |||| || Sbjct 3450853 CGGTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCG 3450794 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || || || || || || |||| ||| |||||| | ||||| || | |||| | Sbjct 3450793 CAGGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGTCC 3450734 Query 125996 TGAATGGTGTCCACCCCAGGTCTAT---TGCGCAAAGTCTTGAAGAGTTCCACGGCAAAC 126052 | |||| | | || | | || | || | ||||| || |||||| Sbjct 3450733 TCAATGACCTGCTTGTTGGGGCGGTGCTTGAGGTGAGAGTACAAGAGG--CA-GGCAAAG 3450677 Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112 || ||| ||||||||||||||||||||||| || || |||||| ||| || |||||| Sbjct 3450676 TCGGTGTGCAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATG 3450617 Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCC 126172 || || |||||||| | ||| || || | ||| | ||| ||||||||| ||||| Sbjct 3450616 AGGCCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGATACCCTCA 3450557 Query 126173 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG 126208 ||| || || |||| ||||||| || |||||| Sbjct 3450556 ACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAG 3450521 >seq8 Length=5005225 Score = 91.5 bits (100), Expect = 2e-13 Identities = 270/409 (66%), Gaps = 13/409 (3%) Strand=Plus/Minus Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849 || || || || || || | || || | ||||||||| || | ||| || | ||| Sbjct 2270179 TCGAAACGGCCGGGACGCATCAGCGCCTTGTCAAGGATGTCGGCTCTGTTGGTGCCAGCG 2270120 Query 10850 ATGACAACGA--TGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGA 10907 | |||||| | ||| | || | | | || || |||||||| ||||||| || || | Sbjct 2270119 AGGACAACAACCTGCTC--CTGGGTGTTGAAACCGTCCATCTCGGTCAAGATCTGGTTCA 2270062 Query 10908 TGGTTTGTTCGCGTTCATCATTCGCGGGCATACC---ACCCGCACTGCGTTGCTT-ACCG 10963 ||| |||||| || || || | ||| | |||| | ||| ||| | ||| Sbjct 2270061 GAGTTGCTTCGCGCTCGTCGTTGCCACCCATTCGGTTACCCTC-CTGTCTTGATCGACCA 2270003 Query 10964 ACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAG 11023 | |||||| || ||||||||||| | ||| || || | | | ||||||| |||| Sbjct 2270002 ATGGCGTCGATCTCATCGATGAAGATGATGCAGGGGGCACTCTTACGGGCATTCGCAAAC 2269943 Query 11024 ATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG--CGGCGG 11081 | ||||| ||||| | ||||||||| |||||||| || ||||| | || | || | Sbjct 2269942 AGGTCTCGCACTCTTGAAGGACCGACACCGACAAACATCTCGACAAACTCGGAACCGCTG 2269883 Query 11082 AACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 11141 | | || |||||| || || || || ||| |||| ||| || | ||||| | Sbjct 2269882 ACGCT--GAAGAAGGGAACACCAGACTCGCCGGCGGTGGCCTTGGCAAGCAACGTCTTAC 2269825 Query 11142 CCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 11190 | || || || || || || | ||| ||||| |||||| | || || Sbjct 2269824 CGGTTCCTGGAGGTCCGGCAAGGATGGCGCCACGAGGGATCTTTGCGCC 2269776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353346124720